View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_12 (Length: 563)
Name: NF15941_low_12
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 14 - 544
Target Start/End: Complemental strand, 46960024 - 46959496
Alignment:
| Q |
14 |
caaaggcatgggagaagattgaaaatgtaaatgtatat--ggagcttatcttacgaacacgaaaaatgggctgagaatcaaaacatggcaggtaagttgg |
111 |
Q |
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| T |
46960024 |
caaaggcatgggagaagattgaaaatgtaaatgtatatatggagcttatcttacgaacacgaaaaatgggctgagaatcaaaacatggcaggtaagttgg |
46959925 |
T |
|
| Q |
112 |
taaccttagcattttcattctcattaaatgtcacccagtaatgttcaatttgattgagtcaagttaaattttctttagggtgggcatggtcttgcctcca |
211 |
Q |
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| T |
46959924 |
taaccttagcattttcattctcattaaatgtcacccagtaatgttcaatttgattgagtcaagttaaattttctttagggtgggcatggtcttgcctcca |
46959825 |
T |
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| Q |
212 |
atatcacatttcaggatatcgtggtggaaaatgtgtccaatccaataataattgatcaatactactgtgattcccgaattccatgcaagaatcaggtatt |
311 |
Q |
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| T |
46959824 |
atatcacatttcaggatatcgtgatggaaaatgtgtccaatccaataataattgatcaatactactgtgattcccgacttccatgcaagaatcaggtatt |
46959725 |
T |
|
| Q |
312 |
gaattttaagatatttttgcagggtcgttttgtaagtctacatgtgcatgcagtgacacattattaatagttgtatttatttatctgaggagatagccaa |
411 |
Q |
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| T |
46959724 |
gaattttaagatatttttgcagggtcattttgcaagtctacatgtgcatgcagtgacacattattaatagttgtatttatttatctgaggagatagccaa |
46959625 |
T |
|
| Q |
412 |
tatagttttgaattgtctttatgatttgtagaatataatagctgatttcataattttcatcgattataatcatgtatgtcagtgacatacattcttgtca |
511 |
Q |
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| T |
46959624 |
tatagttttgaattgtctttatgatttgtagaatataatagctgatttcataattttcatcaattataatc----atgtcagtgacatacattcttgtca |
46959529 |
T |
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| Q |
512 |
atctcctacaaggattcaaattaatgaactttc |
544 |
Q |
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| T |
46959528 |
atctcctacaaggattcaaattaatgaactttc |
46959496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 21 - 336
Target Start/End: Original strand, 44522137 - 44522455
Alignment:
| Q |
21 |
atgggagaagattgaaaatgtaaatgtatatggagcttatcttacgaacacgaaaaatgggctgagaatcaaaacatggcaggtaagttg----gtaacc |
116 |
Q |
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| T |
44522137 |
atgggagaagattcaaaatgtaattgttgatggagcttatctttacaacactgataatggggtgagaatcaaaacatggcaggtaactttcttcgtaacc |
44522236 |
T |
|
| Q |
117 |
ttagcattttcattctcattaaatgtcacccagtaatgttcaatttgattgagtcaagttaaattttctttagggtgggcatggtcttgcctccaatatc |
216 |
Q |
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| T |
44522237 |
gtatcattttcattctcattctatttcacctagtgatga-caagtctattgagtcgagccaaattttctttagggtgggagtggttttgcctccaagatc |
44522335 |
T |
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| Q |
217 |
acatttcaggatatcgtggtggaaaatgtgtccaatccaataataattgatcaatactactgtgattcccgaattccatgcaagaatcaggtattgaatt |
316 |
Q |
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| T |
44522336 |
acattccagaatatcttaatggaaaatgtgtccaatccaataataatagatcaatactactgcgattcacgacatccatgcaagaatcaggtattgaatt |
44522435 |
T |
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| Q |
317 |
ttaagatatttttgcagggt |
336 |
Q |
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| T |
44522436 |
ttaagatatttttgcagggt |
44522455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 487 - 544
Target Start/End: Original strand, 44522569 - 44522627
Alignment:
| Q |
487 |
atgtcagtgacatacattcttgtc-aatctcctacaaggattcaaattaatgaactttc |
544 |
Q |
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| T |
44522569 |
atgtcagtgacatacattcctgtcgaatctccaacaaggattcaaattaatgaagtttc |
44522627 |
T |
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Back To:
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