View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_120 (Length: 309)
Name: NF15941_low_120
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_120 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 296
Target Start/End: Original strand, 4074935 - 4075223
Alignment:
| Q |
9 |
caagaatattttggatctaactactgtcgccattacttttatgtcattcagcttgaaactaggtctaattttttgtttaataaggtaaacaagtatcatt |
108 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4074935 |
caagaatattttggatccaactactgtcgccattacttttatgtcattcagcttgaaactaggtctaattttttgtttaataaggtaaacaagtatcatt |
4075034 |
T |
|
| Q |
109 |
gtgatgaaaaagatacatgacattnnnnnnnnn-cactagcatatgcatgttttttaaggattagggataacaatattctttacacttcaacttccctca |
207 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4075035 |
gtgatgaaaaagatacatgacattaaaaaaaaaacactagcatatgcatgttttttaaggattagggataacaatattctttacacttcaacttccctca |
4075134 |
T |
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| Q |
208 |
cctcagtcaacatcaagagaaaacaagataacaaaccaaaccaaacataaatgtaacgtattgtacttaaagttttcaatatcaaatgt |
296 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||| ||||| |||||||||||||||||||| |
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| T |
4075135 |
cctcagtcaacatcaagagaaaacaagataacaaaacaaaccaaagataaatgtaacatattttacttcaagttttcaatatcaaatgt |
4075223 |
T |
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