View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_low_122 (Length: 309)
Name: NF15941_low_122
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_122 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 309
Target Start/End: Original strand, 26110913 - 26111207
Alignment:
| Q |
15 |
tttccatcttcccttggtacattaaatggcgtgagccatttagccttctccatgcatattgatgnnnnnnnngtttccaacgtccactatcaagcactta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26110913 |
tttccatcttcccttggtacattaaatggcgtgagccatttagcctcctccatgcatattgatgttttttctgtttccaacgtccactatcaagcactta |
26111012 |
T |
|
| Q |
115 |
agtatctgtaaatatgtggtttctaaacaagcaacaattacaaagcacctcttcaatttcccagtcaagacttagaataactgaataaccaatcaatgtg |
214 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
26111013 |
accatctgtaaatatgtggtttctaaacaagcaacaattacaaagcacctcttcaatttcccagtcaagacttagaataaccgaataagcaatcaatgta |
26111112 |
T |
|
| Q |
215 |
ccggacattttctctttcatgtgttatatagcatgtacatttccaatgaagcaaacccttctctcttcttctacttccaagtctgccaacctctc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26111113 |
ccggacattttctctttcatgtgttatataacatgtacatttccaattaagcaaacccttctctcttcttctacttccaagtctgccaacctctc |
26111207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 12094701 - 12094559
Alignment:
| Q |
15 |
tttccatcttcccttggtacattaaatggcgtgagccatttagccttctccatgcatattgatgnnnnnnnngtttccaacgtccactatcaagcactta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12094701 |
tttccatcttcccttggtacattaaatggcgtgagccatttagcctcctccatgcatattgatgttttttctgtttccaacgtccactatcaagcactta |
12094602 |
T |
|
| Q |
115 |
agtatctgtaaatatgtggtttctaaacaagcaacaattacaa |
157 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12094601 |
accatctgtaaatatgtggtttctaaacaagaaacaattacaa |
12094559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 12094561 - 12094510
Alignment:
| Q |
258 |
caatgaagcaaacccttctctcttcttctacttccaagtctgccaacctctc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12094561 |
caatgaagcaaacccttctctcttcttctacttccaagtctgccaacctctc |
12094510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University