View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_123 (Length: 306)

Name: NF15941_low_123
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_123
NF15941_low_123
[»] chr7 (2 HSPs)
chr7 (1-130)||(6944959-6945088)
chr7 (1-130)||(48942574-48942703)
[»] chr4 (1 HSPs)
chr4 (1-130)||(18302002-18302131)
[»] chr3 (2 HSPs)
chr3 (1-130)||(13234168-13234297)
chr3 (135-203)||(15800055-15800124)
[»] chr2 (3 HSPs)
chr2 (128-288)||(12042982-12043132)
chr2 (153-204)||(12048052-12048104)
chr2 (136-179)||(10582343-10582386)
[»] chr8 (2 HSPs)
chr8 (134-204)||(30198065-30198136)
chr8 (134-179)||(30919420-30919465)
[»] chr1 (1 HSPs)
chr1 (131-178)||(49520009-49520056)
[»] chr5 (3 HSPs)
chr5 (132-172)||(39646270-39646310)
chr5 (134-177)||(8082213-8082255)
chr5 (131-179)||(38340506-38340553)
[»] chr6 (1 HSPs)
chr6 (141-178)||(30863968-30864004)


Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 6944959 - 6945088
Alignment:
Q  1 gaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctatttggtcaaaggat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6944959 gaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctatttggtcaaaggat 6945058  T
Q  101 cagagattcattggattatcaaatgataca 130  Q
    ||||||||||||||||||||||||||||||    
T  6945059 cagagattcattggattatcaaatgataca 6945088  T

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Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 48942703 - 48942574
Alignment:
Q  1 gaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctatttggtcaaaggat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48942703 gaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctatttggtcaaaggat 48942604  T
Q  101 cagagattcattggattatcaaatgataca 130  Q
    ||||||||||||||||||||||||||||||    
T  48942603 cagagattcattggattatcaaatgataca 48942574  T

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Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 18302131 - 18302002
Alignment:
Q  1 gaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctatttggtcaaaggat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18302131 gaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctatttggtcaaaggat 18302032  T
Q  101 cagagattcattggattatcaaatgataca 130  Q
    ||||||||||||||||||||||||||||||    
T  18302031 cagagattcattggattatcaaatgataca 18302002  T

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Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 13234297 - 13234168
Alignment:
Q  1 gaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctatttggtcaaaggat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13234297 gaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctatttggtcaaaggat 13234198  T
Q  101 cagagattcattggattatcaaatgataca 130  Q
    ||||||||||||||||||||||||||||||    
T  13234197 cagagattcattggattatcaaatgataca 13234168  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 15800124 - 15800055
Alignment:
Q  135 ttcaatatgagattcatgtccaatatagatacacactagagattcctttc-attgaattcaattttgtat 203  Q
    ||||||||||||||||||||||| ||||||||||| ||| ||||| | || ||||  |||||||||||||    
T  15800124 ttcaatatgagattcatgtccaaaatagatacacattagggattcgtatcgattgggttcaattttgtat 15800055  T

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Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 128 - 288
Target Start/End: Complemental strand, 12043132 - 12042982
Alignment:
Q  128 acagggattcaatatgagattcatgtccaatatagatacacactagagattcctttcattgaattcaattttgtatctcgataagattcgcatcacatgt 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12043132 acagggattcaatatgagattcatgtccaatatagatacacactagagattcctttcattgaattcaattttgtatctcgataagattcgcatcacatgt 12043033  T
Q  228 atcctaagttggacatggtcacagtaccaaacataaaaggatcattcattcattccttcat 288  Q
    ||||||||||||||||||||          |||||||||||||||||||||||||||||||    
T  12043032 atcctaagttggacatggtc----------acataaaaggatcattcattcattccttcat 12042982  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 12048104 - 12048052
Alignment:
Q  153 tccaatat-agatacacactagagattcctttcattgaattcaattttgtatc 204  Q
    |||||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  12048104 tccaatatgagatacacactagagactcctatcattgaattcaattttgtatc 12048052  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 179
Target Start/End: Original strand, 10582343 - 10582386
Alignment:
Q  136 tcaatatgagattcatgtccaatatagatacacactagagattc 179  Q
    |||| ||||||||||||| ||| |||||||||||||||||||||    
T  10582343 tcaagatgagattcatgttcaaaatagatacacactagagattc 10582386  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 30198136 - 30198065
Alignment:
Q  134 attcaatatgagattcatgtccaatatagatacacactagagattcctttc-attgaattcaattttgtatc 204  Q
    ||||||||||||||| |||| ||| ||||||| ||||||||||||| |||| ||||| |||||||| |||||    
T  30198136 attcaatatgagatttatgttcaaaatagatagacactagagattcgtttcgattgagttcaatttagtatc 30198065  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 30919420 - 30919465
Alignment:
Q  134 attcaatatgagattcatgtccaatatagatacacactagagattc 179  Q
    |||||| |||||||||||||||||||||||| ||||||| ||||||    
T  30919420 attcaagatgagattcatgtccaatatagatgcacactaaagattc 30919465  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 49520009 - 49520056
Alignment:
Q  131 gggattcaatatgagattcatgtccaatatagatacacactagagatt 178  Q
    ||||||| | ||||||||||||||||| ||||||||||||||||||||    
T  49520009 gggattcgagatgagattcatgtccaaaatagatacacactagagatt 49520056  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 39646310 - 39646270
Alignment:
Q  132 ggattcaatatgagattcatgtccaatatagatacacacta 172  Q
    |||||||| ||||||||||||| ||||||||||||||||||    
T  39646310 ggattcaagatgagattcatgttcaatatagatacacacta 39646270  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 177
Target Start/End: Original strand, 8082213 - 8082255
Alignment:
Q  134 attcaatatgagattcatgtccaatatagatacacactagagat 177  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  8082213 attcaagatgagattcatgtccaa-atagatacacactagagat 8082255  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 38340506 - 38340553
Alignment:
Q  131 gggattcaatatgagattcatgtccaatatagatacacactagagattc 179  Q
    ||||||||  ||| ||||||||||||| |||||||||||||||||||||    
T  38340506 gggattcacaatgggattcatgtccaa-atagatacacactagagattc 38340553  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 30863968 - 30864004
Alignment:
Q  141 atgagattcatgtccaatatagatacacactagagatt 178  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  30863968 atgagattcatgtccaa-atagatacacactagagatt 30864004  T

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