View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_128 (Length: 300)
Name: NF15941_low_128
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_128 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 284
Target Start/End: Complemental strand, 43130746 - 43130471
Alignment:
| Q |
9 |
agcaaaggtcaaacatttattgaataagttttattcaaatcttataattgtatttttccaaaattttcaaacacaaacctcgttgcttgagtcacctttg |
108 |
Q |
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| T |
43130746 |
agcaaaggtcaaacatttattgaataagttttattcaaatcttataattgtatttttccaaaattttcaaacacaaacctcgttgcttgagtcacctttg |
43130647 |
T |
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| Q |
109 |
aatgttgatgaggaatatttgatgtcatagatttcctatacaaaagtatcaagagatataggcaaaggtgagacatttattgaataagttttaatcccat |
208 |
Q |
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| T |
43130646 |
aatgttgatgaggaatatttgatgtcatagatttcctatacaaaagtatcaagagatataagcaaaggtgagacatttattgaataagttttaatcccat |
43130547 |
T |
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| Q |
209 |
aataatgttttcctaaaattttcacacacaaacctcatagcttgagtcacctttaattgcagctgaggaatctttg |
284 |
Q |
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| T |
43130546 |
aataatgttttcccaaaattttcacacacaaacctcattgcttgagtcacctttaattgcagctgaggaatctttg |
43130471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 25 - 262
Target Start/End: Complemental strand, 43130888 - 43130648
Alignment:
| Q |
25 |
ttattgaataagttttattcaaatcttataattgtatttttccaaaattttcaaacacaaacctcgttgcttgagtcacctttgaatgttgatgaggaat |
124 |
Q |
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| T |
43130888 |
ttattgaataagttttattccaatctcatgattgtgtttatctaaaattttcacatacaaacctcattgtttgagtcatctttgattgatgttgaggaat |
43130789 |
T |
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| Q |
125 |
atttgatgtcatagatttcctatacaaaagtatcaagagatataggcaaaggtgagacatttattgaataagtttt-----aatcccataataatgtttt |
219 |
Q |
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| T |
43130788 |
cttggatgtcatgggttcactatacaaaattatca--agatataagcaaaggtcaaacatttattgaataagttttattcaaatcttataattgtatttt |
43130691 |
T |
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| Q |
220 |
cctaaaattttcacacacaaacctcatagcttgagtcaccttt |
262 |
Q |
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| T |
43130690 |
tccaaaattttcaaacacaaacctcgttgcttgagtcaccttt |
43130648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 30 - 282
Target Start/End: Complemental strand, 43131040 - 43130786
Alignment:
| Q |
30 |
gaataagttttattcaaatcttataattgtatttttccaaaattttcaaacacaaacctcgttgcttgagtcacctttgaatgttgatgaggaatatttg |
129 |
Q |
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||||||||||||||||||| |||||||||| ||| || |||||||||| | |||||||| |||||| || || ||| || || || |||||||| | || |
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| T |
43131040 |
gaataagttttattcaaattttataattgtgtttatctaaaattttcacatgcaaacctcattgcttcagccatcttcgattgctgctgaggaatctctg |
43130941 |
T |
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| Q |
130 |
atgtcatagatttcctatacaaaagtatcaagagatataggcaaaggtgagacatttattgaataagtttt-----aatcccataataatgttttcctaa |
224 |
Q |
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||||||| ||| |||||||||||||||| |||||||| || ||||| | | |||||||||||||||| |||| ||| || ||||| |||| |
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| T |
43130940 |
atgtcatgaattcactatacaaaagtatca--agatatagttaagggtga-aaaattattgaataagttttattccaatctcatgattgtgtttatctaa |
43130844 |
T |
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| Q |
225 |
aattttcacacacaaacctcatagcttgagtcacctttaattgcagctgaggaatctt |
282 |
Q |
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| T |
43130843 |
aattttcacatacaaacctcattgtttgagtcatctttgattgatgttgaggaatctt |
43130786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 43130586 - 43130399
Alignment:
| Q |
9 |
agcaaaggtcaaacatttattgaataagttttattcaaatcttataattgtatttttccaaaattttcaaacacaaacctcgttgcttgagtcacctttg |
108 |
Q |
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||||||||| | ||||||||||||||||||||| ||| ||||| | |||| |||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
43130586 |
agcaaaggtgagacatttattgaataagtttta-----atcccataataatgttttcccaaaattttcacacacaaacctcattgcttgagtcaccttta |
43130492 |
T |
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| Q |
109 |
aatgttgatgaggaatatttgatgtcatagatttcctatacaaaagtatcaagagatataggcaaaggtgagacatttattgaataagtttta |
201 |
Q |
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| || | |||||||| ||||| ||||| || |||||||||| | |||||| ||||| | |||||||| | ||||||||||||| ||||| |
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| T |
43130491 |
attgcagctgaggaatctttgaagtcattagttcactatacaaaaatgtcaagatatataagaaaaggtgaaatatttattgaataaatttta |
43130399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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