View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_129 (Length: 297)
Name: NF15941_low_129
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_129 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 14752140 - 14752410
Alignment:
| Q |
20 |
aattgtgcatatgaatgtatttccccgctcatattcttcatggttaaacctagcacatacattttgaaccattgctatgaggtttctatgtgaagatact |
119 |
Q |
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| T |
14752140 |
aattgtgcatatgaatgtatttccccgctcatattcttcgtggttaaacctagcacatacaatttgaaccattgctatgaggtttctatgtgaagatact |
14752239 |
T |
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| Q |
120 |
actcctttgctaggtcctgttgttccagatgagtaaagtagagtagctgtgtcatcttggttgacttgctctctcattggtcttctggccggtccagaac |
219 |
Q |
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| T |
14752240 |
actcctttgcttggtcctgttgttccagatgagtagagtagagtagctgtgtcgtcttggttgacttgctctctctttggtcttctggccggtccagaac |
14752339 |
T |
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| Q |
220 |
ttttagtccacgtgtcatcataggattgaccttctttcttcatcatttcctccagtgtgtttgatgatgtc |
290 |
Q |
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| T |
14752340 |
ttttagtccacgtgtcatcataggattgaccttctttcttcatcatttcctccagtgtgtttgatgatgtc |
14752410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 8534578 - 8534651
Alignment:
| Q |
111 |
gaagatactactcctttgctaggtcctgttgttccagatgagtaaagtagagtagctgtgtcatcttggttgac |
184 |
Q |
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| T |
8534578 |
gaagatactactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgtgtcattctggttgac |
8534651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 8599817 - 8599890
Alignment:
| Q |
111 |
gaagatactactcctttgctaggtcctgttgttccagatgagtaaagtagagtagctgtgtcatcttggttgac |
184 |
Q |
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| T |
8599817 |
gaagatactactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgtgtcattctggttgac |
8599890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 8613609 - 8613536
Alignment:
| Q |
111 |
gaagatactactcctttgctaggtcctgttgttccagatgagtaaagtagagtagctgtgtcatcttggttgac |
184 |
Q |
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| T |
8613609 |
gaagatactactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgtgtcattctggttgac |
8613536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 254
Target Start/End: Original strand, 53619060 - 53619095
Alignment:
| Q |
219 |
cttttagtccacgtgtcatcataggattgaccttct |
254 |
Q |
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| T |
53619060 |
cttttagtccacgtgtcatcatagtattgaccttct |
53619095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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