View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_135 (Length: 289)
Name: NF15941_low_135
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_135 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 85 - 273
Target Start/End: Original strand, 25886669 - 25886857
Alignment:
| Q |
85 |
catggttaaaacttaaaagttcatgtgatgagaattgttaaggtttcatcatattatatgttatgtcatgttagaaagaaaatatataacaagtttggta |
184 |
Q |
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| T |
25886669 |
catggttaaaacttaaaagttcatgtgatgagaattgttaaggtttcatcatattatatgttatgtcatgttagaaagaaaatatataacaagtttgata |
25886768 |
T |
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| Q |
185 |
catgatagaaaggaagcatgcaactgtattttgtcttgtgataatatgaacaataattttttgtgtgaaccggtatgctctgcaacaac |
273 |
Q |
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| T |
25886769 |
catgatagaaaggaagcatgcaactgtattttgtcttgtgataatatgaacaataattttttgtgtgaaccggtatgctctgcaacaac |
25886857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 227
Target Start/End: Original strand, 44350519 - 44350643
Alignment:
| Q |
97 |
ttaaaagttcatgtgatgagaattgttaaggtttcatcatattatatgttatgtcatgttagaaagaaaatatataacaagtttggtacatgatagaaag |
196 |
Q |
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| T |
44350519 |
ttaaaagttcatgtgatgagaattgttaaggtttcatca---tatatgttatgtcatgtt----agaaaatatataacaagtttgatacatgataggaag |
44350611 |
T |
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| Q |
197 |
gaagcatgcaactgta-ttttgtcttgtgata |
227 |
Q |
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| T |
44350612 |
ggagcatgcaactgaacttgtgtcttgtgata |
44350643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 25886609 - 25886654
Alignment:
| Q |
10 |
agatgaatctataggtaaaagggtgcatgaaggagaagttagccat |
55 |
Q |
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| T |
25886609 |
agatgaatctataggtaaaagggtgcatgaaggagaagttagccat |
25886654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 44350457 - 44350502
Alignment:
| Q |
10 |
agatgaatctataggtaaaagggtgcatgaaggagaagttagccat |
55 |
Q |
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| T |
44350457 |
agatggatctgtaggtaaaagggtgcatgaaggagaagttagccat |
44350502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 14283790 - 14283835
Alignment:
| Q |
10 |
agatgaatctataggtaaaagggtgcatgaaggagaagttagccat |
55 |
Q |
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| T |
14283790 |
agatgaatgtataggtaaaagggtgcatgaaggagaagttagccat |
14283835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 14321939 - 14321984
Alignment:
| Q |
10 |
agatgaatctataggtaaaagggtgcatgaaggagaagttagccat |
55 |
Q |
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| T |
14321939 |
agatgaatctacaggtaaaagggtgcatgaaggagaagttagccat |
14321984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 14271003 - 14271047
Alignment:
| Q |
11 |
gatgaatctataggtaaaagggtgcatgaaggagaagttagccat |
55 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14271003 |
gatgaatgtataggtaaaagggtgcatgaaggagaagttagccat |
14271047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 14305548 - 14305593
Alignment:
| Q |
10 |
agatgaatctataggtaaaagggtgcatgaaggagaagttagccat |
55 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
14305548 |
agatgaatgtaaaggtaaaagggtgcatgaaggagaagttagccat |
14305593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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