View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_141 (Length: 284)

Name: NF15941_low_141
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_141
NF15941_low_141
[»] chr8 (4 HSPs)
chr8 (20-180)||(24995915-24996078)
chr8 (209-241)||(24995854-24995886)
chr8 (243-274)||(24994364-24994395)
chr8 (209-239)||(9519148-9519178)
[»] chr7 (1 HSPs)
chr7 (77-136)||(43243098-43243157)
[»] chr1 (1 HSPs)
chr1 (209-241)||(31586223-31586255)
[»] chr4 (1 HSPs)
chr4 (243-274)||(53687310-53687341)


Alignment Details
Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 24996078 - 24995915
Alignment:
Q  20 catacgggacatgaaattgacatgaacatgtcaacactgatttttt---gtttgttcagaaaataacataatttattgtaattgcaagtgtcgatgttgt 116  Q
    ||||| ||||| || ||||||| |||||||||||||| ||||||||   ||||||| |||||||||||||||| |||||||| |||||| ||| ||| ||    
T  24996078 catacaggacacgacattgacacgaacatgtcaacaccgatttttttttgtttgtttagaaaataacataattcattgtaatcgcaagtatcggtgtcgt 24995979  T
Q  117 gtttatgttgaacaaaacacatgtcgaacatcggaacacgctttcaattgggtttcgtctttct 180  Q
    || |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24995978 gtctatgttgaacaagacacatgtcgaacatcggaacacactttcaattgggtttcgtctttct 24995915  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 24995886 - 24995854
Alignment:
Q  209 ttcatggtgaggtgggttggcggtgtagtttct 241  Q
    |||||||||||||||||||||||||||||||||    
T  24995886 ttcatggtgaggtgggttggcggtgtagtttct 24995854  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 243 - 274
Target Start/End: Complemental strand, 24994395 - 24994364
Alignment:
Q  243 tccaaaaatttaattcaattcacccctttcat 274  Q
    ||||||||||||||||||||||||||||||||    
T  24994395 tccaaaaatttaattcaattcacccctttcat 24994364  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 239
Target Start/End: Original strand, 9519148 - 9519178
Alignment:
Q  209 ttcatggtgaggtgggttggcggtgtagttt 239  Q
    |||||||||||||||||||||||||||||||    
T  9519148 ttcatggtgaggtgggttggcggtgtagttt 9519178  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 43243098 - 43243157
Alignment:
Q  77 aaataacataatttattgtaattgcaagtgtcgatgttgtgtttatgttgaacaaaacac 136  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||| ||| ||||| |||||    
T  43243098 aaataacataatttaatgtaattacaagtgtcgatgtcgtgtttgtgtcgaacacaacac 43243157  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 31586255 - 31586223
Alignment:
Q  209 ttcatggtgaggtgggttggcggtgtagtttct 241  Q
    |||||||||||||||||||||||||||||||||    
T  31586255 ttcatggtgaggtgggttggcggtgtagtttct 31586223  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 243 - 274
Target Start/End: Original strand, 53687310 - 53687341
Alignment:
Q  243 tccaaaaatttaattcaattcacccctttcat 274  Q
    ||||||||||||||||||||||||||||||||    
T  53687310 tccaaaaatttaattcaattcacccctttcat 53687341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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