View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_143 (Length: 282)

Name: NF15941_low_143
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_143
NF15941_low_143
[»] chr3 (5 HSPs)
chr3 (130-274)||(38791077-38791221)
chr3 (88-147)||(6456479-6456538)
chr3 (88-147)||(6760309-6760368)
chr3 (108-155)||(407048-407095)
chr3 (108-155)||(416847-416894)
[»] chr7 (1 HSPs)
chr7 (88-147)||(39676130-39676189)
[»] chr6 (2 HSPs)
chr6 (164-221)||(20785842-20785899)
chr6 (108-155)||(24183531-24183578)
[»] chr2 (1 HSPs)
chr2 (164-221)||(15046315-15046372)
[»] chr1 (2 HSPs)
chr1 (108-155)||(24346430-24346477)
chr1 (108-155)||(24358702-24358749)


Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 130 - 274
Target Start/End: Original strand, 38791077 - 38791221
Alignment:
Q  130 tatgtattattggatgagctgggacaaatttggtagagtctataccagagtactcaacaggttggaaaagccctcctttgggtgttttgaaaattaatat 229  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  38791077 tatgtattattggatgagatgggacaaatttggtagagcctataccagagtactcgacaggttggaaaagccctcctttgggtgttttgaaaattaatat 38791176  T
Q  230 tgatgcgggttgctttgtagacgacaaacatgttggagtataatc 274  Q
    |||||||||||| |||||||||||||||||||||||||| |||||    
T  38791177 tgatgcgggttgttttgtagacgacaaacatgttggagtctaatc 38791221  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 6456479 - 6456538
Alignment:
Q  88 tcaagctaaaatgttgttattgtgaagacttgtaattacatatatgtattattggatgag 147  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||    
T  6456479 tcaaactaaaatgttgttactgtgaaggcttgtaattacatatatctattattggatgag 6456538  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 6760368 - 6760309
Alignment:
Q  88 tcaagctaaaatgttgttattgtgaagacttgtaattacatatatgtattattggatgag 147  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||    
T  6760368 tcaaactaaaatgttgttactgtgaaggcttgtaattacatatatctattattggatgag 6760309  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 407048 - 407095
Alignment:
Q  108 tgtgaagacttgtaattacatatatgtattattggatgagctgggaca 155  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||    
T  407048 tgtgaaggcttgtaattacatatatgtattattggacgagctgggaca 407095  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 416894 - 416847
Alignment:
Q  108 tgtgaagacttgtaattacatatatgtattattggatgagctgggaca 155  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||    
T  416894 tgtgaaggcttgtaattacatatatgtattattggacgagctgggaca 416847  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 39676130 - 39676189
Alignment:
Q  88 tcaagctaaaatgttgttattgtgaagacttgtaattacatatatgtattattggatgag 147  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  39676130 tcaaactaaaatgttgttactgtgaagtcttgtaattacatatatgtattattggatgag 39676189  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 20785842 - 20785899
Alignment:
Q  164 agagtctataccagagtactcaacaggttggaaaagccctcctttgggtgttttgaaa 221  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  20785842 agagcctataccagagtcctcaaaaggttggaaaagccctcctttgggtgttttgaaa 20785899  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 24183531 - 24183578
Alignment:
Q  108 tgtgaagacttgtaattacatatatgtattattggatgagctgggaca 155  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||    
T  24183531 tgtgaaggcttgtaattacatatatgtattattggacgagctgggaca 24183578  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 15046315 - 15046372
Alignment:
Q  164 agagtctataccagagtactcaacaggttggaaaagccctcctttgggtgttttgaaa 221  Q
    |||| |||||||||||| ||||| |||||||||||||| |||||||||||||||||||    
T  15046315 agagcctataccagagtcctcaaaaggttggaaaagccatcctttgggtgttttgaaa 15046372  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 24346477 - 24346430
Alignment:
Q  108 tgtgaagacttgtaattacatatatgtattattggatgagctgggaca 155  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||    
T  24346477 tgtgaaggcttgtaattacatatatgtattattggacgagctgggaca 24346430  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 24358749 - 24358702
Alignment:
Q  108 tgtgaagacttgtaattacatatatgtattattggatgagctgggaca 155  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||    
T  24358749 tgtgaaggcttgtaattacatatatgtattattggacgagctgggaca 24358702  T

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