View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_145 (Length: 281)
Name: NF15941_low_145
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_145 |
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| [»] scaffold0064 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 267
Target Start/End: Original strand, 35924292 - 35924551
Alignment:
| Q |
8 |
tgaaatgaagctaaaaatattaaaaggaagaggatatactaatatacctgattagcaaatccaataccaaatcctagtaatatccgaccaacgatcaaca |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35924292 |
tgaaaagaagctaaaaatattaaaaggaagaggatatactaatatacctgattagcaaatccaataccaaatcctagtaatatccgaccaacgatcaaca |
35924391 |
T |
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| Q |
108 |
tccaaacgtgttgggcgaagccattaacaagggcaccaatgaggaacaataaacctccaaaaaacatggaaagtttccgaccaaacctacgggtgacact |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35924392 |
tccaaacgtgttgggcgaagccattaacaagggcaccaatgaggaacaataaacctccaaaaaacatggaaagtttccgaccaaacctacgggtgacact |
35924491 |
T |
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| Q |
208 |
cgacgccaccagcgaagacaacaacgcggctaggtacaaggacgatgtaaacatagttag |
267 |
Q |
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| T |
35924492 |
cgacgccaccagcgaagacaacaacgcggctaggtacaaggacgatgtaaacatcgttag |
35924551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 198
Target Start/End: Complemental strand, 36200649 - 36200502
Alignment:
| Q |
51 |
atacctgattagcaaatccaataccaaatcctagtaatatccgaccaacgatcaacatccaaacgtgttgggcgaagccattaacaagggcaccaatgag |
150 |
Q |
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| T |
36200649 |
atacctgattagcaaacccgataccaaacccgagcaagatccgacccacgatcaacatccaaacatgattagcaaagccattaataagagcaccgacaag |
36200550 |
T |
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| Q |
151 |
gaacaataaacctccaaaaaacatggaaagtttccgaccaaacctacg |
198 |
Q |
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| T |
36200549 |
gaaaagtaatcctccgaaaagcatggaaagtttccgaccaaacctacg |
36200502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 51 - 268
Target Start/End: Original strand, 17997 - 18214
Alignment:
| Q |
51 |
atacctgattagcaaatccaataccaaatcctagtaatatccgaccaacgatcaacatccaaacgtgttgggcgaagccattaacaagggcaccaatgag |
150 |
Q |
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|||||||||| ||||| || |||||||| || || || |||||||||| ||||||||||||||| ||||| || |||||||||| ||||| || ||||| |
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| T |
17997 |
atacctgattcgcaaacccgataccaaaaccaagaaagatccgaccaaggatcaacatccaaacatgttgagcaaagccattaatgagggctccgatgag |
18096 |
T |
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| Q |
151 |
gaacaataaacctccaaaaaacatggaaagtttccgaccaaacctacgggtgacactcgacgccaccagcgaagacaacaacgcggctaggtacaaggac |
250 |
Q |
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| T |
18097 |
gaaaagcagacctccaaaaagcattgaaagtttccgaccaaacttacgagtcacggtggaagccaccaatgacgacaacagcgctgccagatacattgac |
18196 |
T |
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| Q |
251 |
gatgtaaacatagttagt |
268 |
Q |
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| T |
18197 |
gatgtgaacatcgttagt |
18214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 18235186 - 18235266
Alignment:
| Q |
52 |
tacctgattagcaaatccaataccaaatcctagtaatatccgaccaacgatcaacatccaaacgtgttgggcgaagccatt |
132 |
Q |
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||||||||||||| |||||||||| ||||| ||||| || |||||||| || | ||||||||| | ||| || |||||||| |
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| T |
18235186 |
tacctgattagcacatccaataccgaatccaagtaacatacgaccaacaatgagcatccaaacctcttgagcaaagccatt |
18235266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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