View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_146 (Length: 281)

Name: NF15941_low_146
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_146
NF15941_low_146
[»] chr2 (5 HSPs)
chr2 (42-165)||(39190277-39190402)
chr2 (32-147)||(4840418-4840531)
chr2 (118-165)||(14661523-14661570)
chr2 (114-148)||(18341074-18341108)
chr2 (92-148)||(17527161-17527217)
[»] chr8 (6 HSPs)
chr8 (191-266)||(44036274-44036349)
chr8 (68-182)||(39517563-39517680)
chr8 (33-147)||(1262488-1262602)
chr8 (68-183)||(44626323-44626441)
chr8 (92-183)||(32037919-32038014)
chr8 (92-183)||(18325083-18325175)
[»] chr6 (5 HSPs)
chr6 (70-182)||(28498183-28498297)
chr6 (70-182)||(29810594-29810708)
chr6 (76-182)||(23848394-23848498)
chr6 (69-114)||(22957950-22957995)
chr6 (69-114)||(23830397-23830442)
[»] chr4 (8 HSPs)
chr4 (32-139)||(2229032-2229139)
chr4 (69-119)||(6262364-6262414)
chr4 (96-148)||(44160564-44160616)
chr4 (121-183)||(18890933-18890996)
chr4 (114-182)||(13393475-13393544)
chr4 (114-182)||(13396614-13396683)
chr4 (125-165)||(33361879-33361920)
chr4 (125-165)||(33367024-33367065)
[»] chr1 (3 HSPs)
chr1 (69-183)||(24522961-24523079)
chr1 (69-183)||(24515179-24515291)
chr1 (126-182)||(12017543-12017600)
[»] scaffold0062 (1 HSPs)
scaffold0062 (32-182)||(39954-40107)
[»] chr7 (3 HSPs)
chr7 (69-166)||(26450758-26450858)
chr7 (125-165)||(48853867-48853908)
chr7 (36-148)||(40771488-40771602)
[»] chr3 (7 HSPs)
chr3 (69-183)||(39032554-39032672)
chr3 (69-183)||(38445853-38445971)
chr3 (69-183)||(41273164-41273276)
chr3 (69-148)||(39039603-39039685)
chr3 (110-183)||(11458368-11458441)
chr3 (70-119)||(10626173-10626222)
chr3 (92-180)||(46612058-46612145)
[»] chr5 (1 HSPs)
chr5 (69-182)||(11340025-11340141)
[»] scaffold0040 (2 HSPs)
scaffold0040 (128-186)||(68046-68105)
scaffold0040 (128-183)||(60570-60626)


Alignment Details
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 42 - 165
Target Start/End: Original strand, 39190277 - 39190402
Alignment:
Q  42 tagttatccatctcatagttgtcggtggttatccttcatcaacctaatttaa-ggtacacaaattattcttccttctttattattgatgatatgctataa 140  Q
    |||| |||| ||||||||||||||| ||||||||||||||||||||||| || ||||||||| || | ||||||||||||||||||||||||||||||||    
T  39190277 tagtcatccctctcatagttgtcggcggttatccttcatcaacctaattcaaaggtacacaatttctccttccttctttattattgatgatatgctataa 39190376  T
Q  141 tttgtatc-agtgatctatggctaaa 165  Q
    |||||||| ||||||| ||| |||||    
T  39190377 tttgtatctagtgatccatgactaaa 39190402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 4840531 - 4840418
Alignment:
Q  32 ggaatgagggtagttatccatctcatagttgtcggtggttatccttcatcaacctaatttaa-ggtacacaaattattcttccttctttattattgatga 130  Q
    |||||||||||||| |||| |||||  |||||| | ||| |||| |||| ||||||||| || ||||||||| || |||||||||||||||| |||||||    
T  4840531 ggaatgagggtagtcatccctctca--gttgtctgcggt-atccatcattaacctaattcaaaggtacacaatttcttcttccttctttattcttgatga 4840435  T
Q  131 tatgctataatttgtat 147  Q
    |||||||||||||||||    
T  4840434 tatgctataatttgtat 4840418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 14661523 - 14661570
Alignment:
Q  118 ttattattgatgatatgctataatttgtatcagtgatctatggctaaa 165  Q
    |||||| |||||||||||||||||||||||| |||||| |||||||||    
T  14661523 ttattactgatgatatgctataatttgtatctgtgatccatggctaaa 14661570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 18341108 - 18341074
Alignment:
Q  114 ttctttattattgatgatatgctataatttgtatc 148  Q
    ||||||||||||||| |||||||||||||||||||    
T  18341108 ttctttattattgataatatgctataatttgtatc 18341074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 17527217 - 17527161
Alignment:
Q  92 aaggtacacaaattattcttccttctttattattgatgatatgctataatttgtatc 148  Q
    ||||||||||| || ||  ||||| ||| ||| ||||||||||||||||||||||||    
T  17527217 aaggtacacaatttcttaatccttatttgttaatgatgatatgctataatttgtatc 17527161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 44036349 - 44036274
Alignment:
Q  191 atacatatactcatatacatgatgtgtatgtaaccatgtatctgcagagaaatatgaaaagttcaagcaaaatatt 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44036349 atacatatactcatatacatgatgtgtatgtaaccatgtatctgcagtgaaatatgaaaagttcaagcaaaatatt 44036274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 68 - 182
Target Start/End: Original strand, 39517563 - 39517680
Alignment:
Q  68 ggttatccttcatcaacctaatttaa-ggtacacaaattattc-ttccttctttattattgatgatatgctataatttgtatc-agtgatctatggctaa 164  Q
    |||||||||| ||||||||||||||| ||||||||| || ||| ||| |||||| |||||||||||||||||||| ||||||| ||||||  ||||||||    
T  39517563 ggttatcctttatcaacctaatttaaaggtacacaatttcttcattcattctttgttattgatgatatgctataacttgtatctagtgatacatggctaa 39517662  T
Q  165 attcaaaaacttttatca 182  Q
    |||| ||| |||||||||    
T  39517663 attctaaatcttttatca 39517680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 1262488 - 1262602
Alignment:
Q  33 gaatgagggtagttatccatctcatagttgtcggtggttatccttcatcaacctaatttaaggtacacaaattattcttccttctttattattgatgata 132  Q
    ||||||||||||| |||| |||||||  | | ||  |||||||| ||||||| ||||| |||||||||||||| || |||||||||||||||  ||||||    
T  1262488 gaatgagggtagtcatccctctcatatctattggcagttatcctccatcaacataattcaaggtacacaaattcttattccttctttattatcaatgata 1262587  T
Q  133 tgctataatttgtat 147  Q
    |||||||| ||||||    
T  1262588 tgctataacttgtat 1262602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 44626323 - 44626441
Alignment:
Q  68 ggttatccttcatcaacctaatt--taaggtacacaaattattcttccttctttattattgatgatatgctataatttgtatc-agtgatctatggctaa 164  Q
    |||||||||||||||||||||||   |||||||| |  || ||| || |||||||||| |  ||||||||||||||||||||| ||||||  ||||||||    
T  44626323 ggttatccttcatcaacctaattcaaaaggtacatagtttcttcatcattctttattactactgatatgctataatttgtatctagtgattcatggctaa 44626422  T
Q  165 attcaaaaacttttatcaa 183  Q
    |  | ||||||||||||||    
T  44626423 aaactaaaacttttatcaa 44626441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 32038014 - 32037919
Alignment:
Q  92 aaggtacacaaattattcttccttctttattatt---gatgatatgctataatttgtatc-agtgatctatggctaaattcaaaaacttttatcaa 183  Q
    ||||||||||| || || |||||||||| ||| |   ||| ||||||||||||||||||| ||||||| |||||||||  | ||||||||||||||    
T  32038014 aaggtacacaatttcttattccttctttgttactaccgataatatgctataatttgtatctagtgatccatggctaaacactaaaacttttatcaa 32037919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 18325083 - 18325175
Alignment:
Q  92 aaggtacacaaattattcttccttctttattattgatgatatgctataatttgtatc-agtgatctatggctaaattcaaaaacttttatcaa 183  Q
    |||||||| || || |||||| || ||| ||| |||||||||||||||| ||||||| | | ||| |||||||||| | ||| ||||||||||    
T  18325083 aaggtacataatttcttcttctttatttgttactgatgatatgctataacttgtatctaataatccatggctaaatcctaaatcttttatcaa 18325175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 28498297 - 28498183
Alignment:
Q  70 ttatccttcatcaacctaatttaaggtacacaaat-tattcttccttctttattattgatgatatgctataatttgtatc-agtgatctatggctaaatt 167  Q
    ||||||||| ||||||||||| ||||||||||  | | ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||     
T  28498297 ttatccttcctcaacctaattcaaggtacacagttcttttcttccttctttattattgatgatatactataatttgtatctagtgatccatggctaaata 28498198  T
Q  168 caaaaacttttatca 182  Q
    | ||||| |||||||    
T  28498197 ctaaaacgtttatca 28498183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 29810708 - 29810594
Alignment:
Q  70 ttatccttcatcaacctaatttaaggtacacaaat-tattcttccttctttattattgatgatatgctataatttgtatc-agtgatctatggctaaatt 167  Q
    ||||||||| ||||||||||| ||||||||||  | | ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||     
T  29810708 ttatccttcctcaacctaattcaaggtacacagttcttttcttccttctttattattgatgatatactataatttgtatctagtgatccatggctaaata 29810609  T
Q  168 caaaaacttttatca 182  Q
    | ||||| |||||||    
T  29810608 ctaaaacgtttatca 29810594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 182
Target Start/End: Complemental strand, 23848498 - 23848394
Alignment:
Q  76 ttcatcaacctaatttaaggtacacaaattattcttccttctttattattgatgatatgctataatttgtat-cagtgatctatggctaaattcaaaaac 174  Q
    |||||||||||||||||||||||||||||| ||| |||||||||  ||    ||||||||||||| |||||| || ||||| ||| || ||| | |||||    
T  23848498 ttcatcaacctaatttaaggtacacaaattcttcgtccttctttgata---ctgatatgctataacttgtatccactgatccatgactgaatcctaaaac 23848402  T
Q  175 ttttatca 182  Q
    ||||||||    
T  23848401 ttttatca 23848394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 22957995 - 22957950
Alignment:
Q  69 gttatccttcatcaacctaatttaaggtacacaaattattcttcct 114  Q
    |||||||||||||||||||||| ||| |||||||||| ||||||||    
T  22957995 gttatccttcatcaacctaattcaagatacacaaattcttcttcct 22957950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 23830397 - 23830442
Alignment:
Q  69 gttatccttcatcaacctaatttaaggtacacaaattattcttcct 114  Q
    |||||||||||||||||||||| ||| |||||||||| ||||||||    
T  23830397 gttatccttcatcaacctaattcaagatacacaaattcttcttcct 23830442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 2229032 - 2229139
Alignment:
Q  32 ggaatgagggtagttatccatctcatagttgtcggtggttatccttcatcaacctaatttaa-ggtacacaaattattcttccttctttattattgatga 130  Q
    ||||||||||||||||||| ||||||| ||||||  |||||| |||||||||||||||| || |||| |||| || ||||||||||||| ||||||||||    
T  2229032 ggaatgagggtagttatccctctcata-ttgtcgacggttattcttcatcaacctaattgaaaggtatacaatttcttcttccttctttgttattgatga 2229130  T
Q  131 tatgctata 139  Q
    |||| ||||    
T  2229131 tatgatata 2229139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 6262364 - 6262414
Alignment:
Q  69 gttatccttcatcaacctaatttaaggtacacaaattattcttccttcttt 119  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  6262364 gttatccttcatcaacataattcaaggtacacaaattcttcttccttcttt 6262414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 44160616 - 44160564
Alignment:
Q  96 tacacaaattattcttccttctttattattgatgatatgctataatttgtatc 148  Q
    ||||||| |||||  || |||||| ||||||||||||||||||||||||||||    
T  44160616 tacacaatttattaatctttctttgttattgatgatatgctataatttgtatc 44160564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 18890996 - 18890933
Alignment:
Q  121 ttattgatgatatgctataatttgtatc-agtgatctatggctaaattcaaaaacttttatcaa 183  Q
    |||||||||||||||||||||||||||| ||||||  ||| || ||| | ||||||||||||||    
T  18890996 ttattgatgatatgctataatttgtatctagtgattaatgactgaatcctaaaacttttatcaa 18890933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 13393544 - 13393475
Alignment:
Q  114 ttctttattattgatgatatgctataatttgtatc-agtgatctatggctaaattcaaaaacttttatca 182  Q
    ||||||| ||||||| ||||| | ||| ||||||  |||||||||||||||||| | |||||||||||||    
T  13393544 ttctttactattgattatatgttgtaacttgtatttagtgatctatggctaaatacgaaaacttttatca 13393475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 13396683 - 13396614
Alignment:
Q  114 ttctttattattgatgatatgctataatttgtatc-agtgatctatggctaaattcaaaaacttttatca 182  Q
    ||||||| ||||||| ||||| | ||| ||||||  |||||||||||||||||| | |||||||||||||    
T  13396683 ttctttactattgattatatgttgtaacttgtatttagtgatctatggctaaatacgaaaacttttatca 13396614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 33361879 - 33361920
Alignment:
Q  125 tgatgatatgctataatttgtatc-agtgatctatggctaaa 165  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  33361879 tgatgatatgctataatttgtatctagtgatcgatggctaaa 33361920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 33367024 - 33367065
Alignment:
Q  125 tgatgatatgctataatttgtatc-agtgatctatggctaaa 165  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  33367024 tgatgatatgctataatttgtatctagtgatccatggctaaa 33367065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 24523079 - 24522961
Alignment:
Q  69 gttatccttcatcaacctaatttaaggtacacaaattattcttccttctttattattga---tgatatgctataatttgtatc-agtgatctatggctaa 164  Q
    |||||| ||||||||| ||||| |||||||||||||| |||||||||||||  ||||||   ||||||||||||| ||||||| ||||||| |||||| |    
T  24523079 gttatcattcatcaacataattcaaggtacacaaattcttcttccttctttgatattgatattgatatgctataacttgtatctagtgatccatggctga 24522980  T
Q  165 attcaaaaacttttatcaa 183  Q
    || | ||||||||||||||    
T  24522979 atactaaaacttttatcaa 24522961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 24515291 - 24515179
Alignment:
Q  69 gttatccttcatcaacctaatttaaggtacacaaattattcttccttctttattattgatgatatgctataatttgtatc-agtgatctatggctaaatt 167  Q
    |||||| ||||||||| ||||| |||||| ||||||| |||||||||||||  |||   ||||||||||||| ||||||| ||||||| |||||| |||     
T  24515291 gttatcattcatcaacataattcaaggtatacaaattcttcttccttctttgatat---tgatatgctataacttgtatctagtgatccatggctgaata 24515195  T
Q  168 caaaaacttttatcaa 183  Q
    | ||||||||||||||    
T  24515194 ctaaaacttttatcaa 24515179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 12017600 - 12017543
Alignment:
Q  126 gatgatatgctataatttgtatc-agtgatctatggctaaattcaaaaacttttatca 182  Q
    ||||||||||||||| || |||| ||||||||||| |||||| | |||||||||||||    
T  12017600 gatgatatgctataacttatatctagtgatctatgactaaatactaaaacttttatca 12017543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 182
Target Start/End: Complemental strand, 40107 - 39954
Alignment:
Q  32 ggaatgagggtagttatccatctcatagttgtcggtggttatccttcatcaacctaatt-taaggtacacaaattattcttccttct-ttattattgatg 129  Q
    |||||||||||||| |||| ||| ||||||||||| |||||||||||||||| ||||||  ||  ||||||| || || |||||| | || ||||| |||    
T  40107 ggaatgagggtagtcatccctcttatagttgtcggcggttatccttcatcaatctaattcaaatatacacaatttcttattccttttattgttattaatg 40008  T
Q  130 atatgctataatttgtatc-agtgatctatggctaaattcaaaaacttttatca 182  Q
    ||||||||||||||||||| ||| ||| ||| |||||  | |||||||||||||    
T  40007 atatgctataatttgtatctagttatccatgactaaacactaaaacttttatca 39954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 26450858 - 26450758
Alignment:
Q  69 gttatccttcatcaacctaatttaa-ggtacacaaattattc-ttccttctttattattgatgatatgctataatttgtat-cagtgatctatggctaaa 165  Q
    |||||||||||||||||||||| || ||||||||| || ||  ||| ||||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  26450858 gttatccttcatcaacctaattcaaaggtacacaatttctttattcattctttattattgatgatatgctataatttgtatatagtgatccatggctaaa 26450759  T
Q  166 t 166  Q
    |    
T  26450758 t 26450758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 48853867 - 48853908
Alignment:
Q  125 tgatgatatgctataatttgtatc-agtgatctatggctaaa 165  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  48853867 tgatgatatgctataatttgtatctagtgatctatggctaaa 48853908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 40771602 - 40771488
Alignment:
Q  36 tgagggtagttatccatctcatagttgtcggtggttatccttcatcaacctaat--ttaaggtacacaaattattcttccttctttattattgatgatat 133  Q
    |||||||||| |||| ||||||| |||| ||||||| || ||||| ||| |||   | |||| |||||| || || ||||| |||| ||| | |||||||    
T  40771602 tgagggtagtcatccctctcatacttgttggtggttgtctttcatgaacttaaacctaaaggaacacaatttcttattcctgctttgttactaatgatat 40771503  T
Q  134 gctataatttgtatc 148  Q
    |||||||||||||||    
T  40771502 gctataatttgtatc 40771488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 39032672 - 39032554
Alignment:
Q  69 gttatccttcatcaacctaatttaaggtacacaaattattcttccttctttattattga---tgatatgctataatttgtatc-agtgatctatggctaa 164  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||||||||  || |||   ||||||||||||| ||||||| | ||||| |||||| |    
T  39032672 gttatccttcatcaacataattcaaggtacacaaattcttcttccttctttgatactgatactgatatgctataacttgtatctactgatccatggctta 39032573  T
Q  165 attcaaaaacttttatcaa 183  Q
    |||  ||||||||||||||    
T  39032572 attataaaacttttatcaa 39032554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 38445853 - 38445971
Alignment:
Q  69 gttatccttcatcaacctaatttaaggtacacaaattattcttccttctt---tattattgatgatatgctataatttgtatc-agtgatctatggctaa 164  Q
    |||||||||||||||| ||||| |||||||||||||| ||||||||||||   || || || ||||||||||||| ||||||| | ||||| |||||| |    
T  38445853 gttatccttcatcaacataattcaaggtacacaaattcttcttccttctttgatactaatgttgatatgctataacttgtatctactgatccatggctga 38445952  T
Q  165 attcaaaaacttttatcaa 183  Q
    ||   ||||||||||||||    
T  38445953 atcataaaacttttatcaa 38445971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 41273164 - 41273276
Alignment:
Q  69 gttatccttcatcaacctaatttaaggtacacaaattattcttccttctttattattgatgatatgctataatttgtatc-agtgatctatggctaaatt 167  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||||| || |||    ||||||| ||||  ||||||| | |||||||||| | ||||    
T  41273164 gttatccttcatcaacataattcaaggtacacaaattcttcttccttccttgtta---ctgatatgttataccttgtatctactgatctatggttgaatt 41273260  T
Q  168 caaaaacttttatcaa 183  Q
    | ||||||||||||||    
T  41273261 ctaaaacttttatcaa 41273276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 39039685 - 39039603
Alignment:
Q  69 gttatccttcatcaacctaatttaaggtacacaaattattcttccttctttattattga---tgatatgctataatttgtatc 148  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||||||||  || |||   ||||||||||||| |||||||    
T  39039685 gttatccttcatcaacataattcaaggtacacaaattcttcttccttctttgatactgatactgatatgctataacttgtatc 39039603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 11458368 - 11458441
Alignment:
Q  110 ttccttctttattattgatgatatgctataatttgtatcagtgatctatggctaaattcaaaaacttttatcaa 183  Q
    |||||||| | |||||||||||||| |||||||||||||  |||||||||||||| |   ||||||||||||||    
T  11458368 ttccttctctcttattgatgatatgttataatttgtatctatgatctatggctaagtgttaaaacttttatcaa 11458441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 10626222 - 10626173
Alignment:
Q  70 ttatccttcatcaacctaatttaaggtacacaaattattcttccttcttt 119  Q
    ||||| ||||||||| ||||| |||||||||||||| |||||||||||||    
T  10626222 ttatcattcatcaacataattcaaggtacacaaattcttcttccttcttt 10626173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 46612058 - 46612145
Alignment:
Q  92 aaggtacacaaattattcttccttctttattattgatgatatgctataatttgtatc-agtgatctatggctaaattcaaaaacttttat 180  Q
    ||||||||||| || || || ||||||| |||  ||||||||||||  ||||||||| | |||||||||| ||||||| |||||||||||    
T  46612058 aaggtacacaattttttatttcttctttgttaccgatgatatgcta--atttgtatctaatgatctatggttaaattctaaaacttttat 46612145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 182
Target Start/End: Original strand, 11340025 - 11340141
Alignment:
Q  69 gttatccttcatcaacctaattt-aaggtacacaaatt-attcttccttctttattattgatgatatgctataatttgtatc-agtgatctatggctaaa 165  Q
    ||||||||||||||||||||||| || |||||||| ||  || ||| |||||||||||||||||||||  |||| ||||||| ||||||| |||||||||    
T  11340025 gttatccttcatcaacctaatttaaaagtacacaatttctttattcattctttattattgatgatatgtcataacttgtatctagtgatccatggctaaa 11340124  T
Q  166 ttcaaaaacttttatca 182  Q
      | |||||||||||||    
T  11340125 cactaaaacttttatca 11340141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 68046 - 68105
Alignment:
Q  128 tgatatgctataatttgtatc-agtgatctatggctaaattcaaaaacttttatcaacac 186  Q
    ||||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||||    
T  68046 tgatatgctataatttgtatctaatgatccatggctaaattctaaaacttttatcaacac 68105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 60570 - 60626
Alignment:
Q  128 tgatatgctataatttgtatc-agtgatctatggctaaattcaaaaacttttatcaa 183  Q
    ||||||||||||||||||||| | ||||| |||||||||||| ||||||||||||||    
T  60570 tgatatgctataatttgtatctaatgatccatggctaaattctaaaacttttatcaa 60626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University