View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_low_151 (Length: 271)
Name: NF15941_low_151
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_151 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 8925457 - 8925703
Alignment:
| Q |
20 |
tcaactactccactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaattgaaa |
119 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8925457 |
tcaactacttcactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaattgaaa |
8925556 |
T |
|
| Q |
120 |
gcaggaaggtttaaaatgtggagtagagttgcaaagcaattgaaagaacaactaataacaaatgtattaacatgaaagaacaactgataacaactgtatt |
219 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8925557 |
gcaggaaggtttaaaatatggagtaaagttgcaaagcaattgaaagaacaactaataacaaatgtattaacatgaaagaacaactgataacaaatgtatt |
8925656 |
T |
|
| Q |
220 |
gacatgaaaaacaagtaagaatttagttatgggttgttcttctcact |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8925657 |
aacatgaaaaacaagtaagaatttagttatgggttgttcttttcact |
8925703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 8935714 - 8935960
Alignment:
| Q |
20 |
tcaactactccactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaattgaaa |
119 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8935714 |
tcaactacttcactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaattgaaa |
8935813 |
T |
|
| Q |
120 |
gcaggaaggtttaaaatgtggagtagagttgcaaagcaattgaaagaacaactaataacaaatgtattaacatgaaagaacaactgataacaactgtatt |
219 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8935814 |
gcaggaaggtttaaaatatggagtaaagttgcaaagcaattgaaagaacaactaataacaaatgtattaacatgaaagaacaactgataacaaatgtatt |
8935913 |
T |
|
| Q |
220 |
gacatgaaaaacaagtaagaatttagttatgggttgttcttctcact |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8935914 |
aacatgaaaaacaagtaagaatttagttatgggttgttcttttcact |
8935960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 4653127 - 4653238
Alignment:
| Q |
20 |
tcaactactccactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaattgaaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4653127 |
tcaactactccactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttatgattctcaacctacataaataaattgaaa |
4653226 |
T |
|
| Q |
120 |
gcaggaaggttt |
131 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4653227 |
gcaggaaggttt |
4653238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 23301776 - 23301541
Alignment:
| Q |
20 |
tcaactactccactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaattgaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23301776 |
tcaactactccactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaattgaaa |
23301677 |
T |
|
| Q |
120 |
gcaggaaggtttaaaatgtggagtagagttgcaaagcaattgaaagaacaactaataacaaatgtattaacatgaaagaacaactgataacaactgtatt |
219 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| | |
|
|
| T |
23301676 |
gcaggaaggtttaaaatgtggagtaaagttgcaaagcaattgaaagaacaactaataacaaatgtattaacatgaaagaacaactaataacaaatgtaat |
23301577 |
T |
|
| Q |
220 |
gacatg-aaaaacaagtaagaatttagttatgggtt |
254 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
23301576 |
aacatgaaaaaacaagtaagaatttacttatgggtt |
23301541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 26926161 - 26926066
Alignment:
| Q |
20 |
tcaactactccactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaatt |
115 |
Q |
| |
|
|||| |||| || ||||||||||| ||||||||| ||| ||||||| |||||||||||||| |||| ||||| || |||||||| ||||||||| |
|
|
| T |
26926161 |
tcaattacttcattttctgaattatcacatggtttattatttggaacattgttcaaatcaattaaatctgtgactcctaacctacacaaataaatt |
26926066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 7162432 - 7162500
Alignment:
| Q |
45 |
cacatggttcattgtttggaaga-ttgttcaaatcaaccaaatttgtgattctcaacctacataaataa |
112 |
Q |
| |
|
||||||||||||| ||| ||||| || |||||||||| |||||||||| ||||||| |||| |||||| |
|
|
| T |
7162432 |
cacatggttcattattttgaagatttcttcaaatcaaataaatttgtgactctcaacttacacaaataa |
7162500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 16150535 - 16150760
Alignment:
| Q |
20 |
tcaactactccactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaattgaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16150535 |
tcaactactccactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaattgaaa |
16150634 |
T |
|
| Q |
120 |
gcaggaaggtttaaaatgtggagtagagttgcaaagcaattgaaagaacaactaataacaaatgtattaacatgaaagaacaactgataacaactgtatt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| | |
|
|
| T |
16150635 |
gcaggaaggtttaaaatgtggagtagagttgcaaagcaattgaaagaacaactaataacaaatgtattaatatgaaagaacaactgataacaaatgtaat |
16150734 |
T |
|
| Q |
220 |
gacatg-aaaaacaagtaagaattta |
244 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
16150735 |
aacatgaaaaaacaagtaagaattta |
16150760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 3669834 - 3669901
Alignment:
| Q |
45 |
cacatggttcattgtttggaagatt-gttcaaatcaaccaaatttgtgattctcaacctacataaata |
111 |
Q |
| |
|
||||||||||||| ||| ||||||| ||||||||||| |||||||||| ||||||| |||| ||||| |
|
|
| T |
3669834 |
cacatggttcattatttagaagatttgttcaaatcaaataaatttgtgactctcaacttacacaaata |
3669901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 1000601 - 1000677
Alignment:
| Q |
39 |
aattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaatt |
115 |
Q |
| |
|
||||| ||||||||| ||| |||||||||||||||||||||| |||||||||| |||||||||||| ||||||||| |
|
|
| T |
1000601 |
aattatcacatggtttattatttggaagattgttcaaatcaattaaatttgtgactctcaacctacacaaataaatt |
1000677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 1000529 - 1000580
Alignment:
| Q |
39 |
aattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgt |
90 |
Q |
| |
|
|||||||||||| || ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
1000529 |
aattaccacatgatttattatttggaagattgttcaaatcaattaaatttgt |
1000580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University