View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_low_158 (Length: 263)
Name: NF15941_low_158
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_158 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 40994795 - 40994557
Alignment:
| Q |
14 |
gtttgaatttggcaaactttgatttgggagatgaaccacttggattaacaagattggtggtaaacaagtgtgatgctgagtatttcatatttaatgcacc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40994795 |
gtttgaatttggcaaactttgatttgggagatgaaccacttggattaacaagattggtggtaaacaagtgtgatgctgagtatttcatatttaatgcacc |
40994696 |
T |
|
| Q |
114 |
aaatcttaaatacttcaaatattctggggctgtgtttacttcagatataaatgtaagggctatagaagaggtagacattgatttttctctagaatcggag |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40994695 |
aaatcttaaatacttcaaatattctggggctgtgtttacttcagatataaatgtaagggctatagaagaggtatacattgatttttctctagaatcggag |
40994596 |
T |
|
| Q |
214 |
tttcatgaacgtggcaatgaactctgccaaatccttcat |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40994595 |
tttcatgaacgtggcaatgaactctgccaaatccttcat |
40994557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 40986941 - 40986834
Alignment:
| Q |
51 |
acttggattaacaagattggtggtaaacaagtgtgatgctgagtatttcatatttaatgcaccaaatcttaaatacttcaaatattctggggctgtgttt |
150 |
Q |
| |
|
|||||| |||| |||| ||||| |||||||||||||| | ||| | ||| ||| |||||||||||||||||| |||||| |||||||||| ||||||| |
|
|
| T |
40986941 |
acttgggttaaaaagaatggtgctaaacaagtgtgatacacagtgtatcaaattagatgcaccaaatcttaaattcttcaagtattctggggatgtgttt |
40986842 |
T |
|
| Q |
151 |
acttcaga |
158 |
Q |
| |
|
|||||||| |
|
|
| T |
40986841 |
acttcaga |
40986834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 21180013 - 21180247
Alignment:
| Q |
18 |
gaatttggcaaactttgatttgggagatgaaccacttggattaacaagattggtggtaaacaagtgtgatgctgagtatttcatatttaatgcaccaaat |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21180013 |
gaatttggcgaactttgatttgggagatgaaccacttggattaacaagattggtggtaaacaagtgtgattctgagtatttcatatttaatgcaccaaat |
21180112 |
T |
|
| Q |
118 |
cttaaatacttcaaatattctggggctgtgtttacttcagatataaatgtaagggctatagaagaggtagacattgatttttctctagaatcggagtttc |
217 |
Q |
| |
|
|| |||||||||||||||||||| | |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||| || || |
|
|
| T |
21180113 |
ctgaaatacttcaaatattctggagttgtgtttacttcagatattaatgttagggctatagaagaggtagacattgatttttctcaagaatcagaattca |
21180212 |
T |
|
| Q |
218 |
atgaacgtggcaatgaactctgccaaatccttcat |
252 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21180213 |
atgaacgtggcaacgaactctgccaaatccttcat |
21180247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University