View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_162 (Length: 260)
Name: NF15941_low_162
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_162 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 11025304 - 11025067
Alignment:
| Q |
7 |
gatgtcgaagaaaataatattttggactattcttaaaattattccaaatcctttgcattactcaactaaacttcgtcataggattaatctttcgacctaa |
106 |
Q |
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| T |
11025304 |
gatgtagaagaaaataatattttggactattcttaaaattattccaaatcctttgcattactcaactaaacttcgtcataggattaatctttcgacctaa |
11025205 |
T |
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| Q |
107 |
atatcatttatcgaaaaaagatataatactattgatcattagattaatctatcgaaaaaagatataatcctttgc--atattattgaattgaacgaagaa |
204 |
Q |
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| T |
11025204 |
atatcatttatcgaaaaaagatataatactattgatcattagattaatctatcgaaaaaagatataatcctttgcatatattattgaattgaacgaagaa |
11025105 |
T |
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| Q |
205 |
tagagttacctttcttctttttggggaaacaatctact |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
11025104 |
tagagttacctttcttctttttggggaaacaatctact |
11025067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 11040176 - 11040117
Alignment:
| Q |
183 |
tattattgaattgaacgaagaatagagttacctttcttctttttggggaaacaatctact |
242 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||| |||| |||||||||| |
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| T |
11040176 |
tattattgaattgaacaaagaatagagttacctttcttgttttttgggacacaatctact |
11040117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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