View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_165 (Length: 257)
Name: NF15941_low_165
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_165 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 230
Target Start/End: Complemental strand, 4027797 - 4027587
Alignment:
| Q |
21 |
aattcaatggcgtatttgtcttctggagcttctcaattaatttattttgtaatgtcttcttattaaattcgaatttgtgttacgaattgatcctgaaact |
120 |
Q |
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| T |
4027797 |
aattcaatggcgtatttgttttccagagcttctcaaataatttatgctgtaatgtctgcttattaaattcgaatttgtgttacgaattgatcctgaaact |
4027698 |
T |
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| Q |
121 |
ttaaaattattcaatgaaaccgtatgtaatcat-gatttttaccttttcgttctatatttgtagatattgtatgagatgtgatgtaagaccaaaaccttt |
219 |
Q |
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| T |
4027697 |
ttaagatttttcaatgaaacagtatgtaatcatggttttttacttcttagctctatatttgtagatattgtatgagctgtgaagtaagaccaaaaccttt |
4027598 |
T |
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| Q |
220 |
ttgtgaccttc |
230 |
Q |
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| T |
4027597 |
ttgtgaccttc |
4027587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 4013577 - 4013500
Alignment:
| Q |
21 |
aattcaatggcgtatttgtcttctggagcttctcaattaatttattttgtaatgtcttcttattaaattcgaatttgt |
98 |
Q |
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| T |
4013577 |
aattcaatggcgtatttgtcttccggagcttctcaaataatatatgctgtaatctctgcttattgatttcgaatttgt |
4013500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 4013366 - 4013299
Alignment:
| Q |
169 |
gttctatatttgtagatattgtatgagatgtgatgtaagaccaaaacctttttgtgaccttctgcctt |
236 |
Q |
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| T |
4013366 |
gttctatatttgtagatattgtatgagctgtagagtaagaccaaaacatttttgttaccttcttcctt |
4013299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 4005329 - 4005242
Alignment:
| Q |
23 |
ttcaatggcgtatttgtcttctggagcttctcaattaatttattttgtaatg--tcttcttattaaattcgaatttgtgttacgaatt |
108 |
Q |
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| T |
4005329 |
ttcaatggcatatttatcttctggaacttctcaactaatatatgctgtaattgctctgtttattaaattcgaatttgtgttatgaatt |
4005242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 3951222 - 3951293
Alignment:
| Q |
169 |
gttctatatttgtagatattgtatgagatgtgatgtaagaccaaaacctttttgtgaccttctgccttatat |
240 |
Q |
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| T |
3951222 |
gttctatatttgtagatattgttagagctttaaagtaagacaaaaacttttttgtgaccttcttccatatat |
3951293 |
T |
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