View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_167 (Length: 256)

Name: NF15941_low_167
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_167
NF15941_low_167
[»] chr1 (26 HSPs)
chr1 (75-245)||(1389345-1389515)
chr1 (1-78)||(47541848-47541925)
chr1 (1-70)||(26500947-26501016)
chr1 (1-73)||(47165077-47165149)
chr1 (1-75)||(24273084-24273157)
chr1 (15-75)||(946869-946929)
chr1 (15-75)||(15467486-15467546)
chr1 (23-75)||(35499546-35499598)
chr1 (15-75)||(220642-220702)
chr1 (17-77)||(12293020-12293080)
chr1 (20-80)||(41480949-41481009)
chr1 (15-77)||(28632124-28632186)
chr1 (15-75)||(6470228-6470289)
chr1 (17-65)||(10166986-10167034)
chr1 (15-75)||(21267346-21267406)
chr1 (17-77)||(37036502-37036562)
chr1 (17-77)||(37446881-37446941)
chr1 (24-75)||(4663808-4663859)
chr1 (17-76)||(23969438-23969497)
chr1 (15-78)||(31166701-31166764)
chr1 (16-75)||(32128574-32128633)
chr1 (15-77)||(37447424-37447486)
chr1 (15-70)||(41822078-41822133)
chr1 (15-73)||(44571680-44571738)
chr1 (39-75)||(21088258-21088294)
chr1 (17-77)||(37447969-37448029)
[»] chr3 (26 HSPs)
chr3 (1-75)||(8762262-8762336)
chr3 (1-80)||(19475952-19476031)
chr3 (1-78)||(33871761-33871838)
chr3 (15-77)||(47714426-47714488)
chr3 (1-77)||(54761424-54761500)
chr3 (15-71)||(34396148-34396204)
chr3 (15-82)||(7977040-7977107)
chr3 (15-73)||(28181800-28181858)
chr3 (15-75)||(48948071-48948131)
chr3 (15-78)||(21731408-21731471)
chr3 (24-79)||(52527508-52527563)
chr3 (15-77)||(34089065-34089127)
chr3 (15-77)||(38506482-38506544)
chr3 (15-72)||(48824637-48824694)
chr3 (15-75)||(36397511-36397571)
chr3 (15-75)||(53469951-53470011)
chr3 (14-69)||(28092152-28092206)
chr3 (15-78)||(35279467-35279530)
chr3 (15-77)||(671186-671248)
chr3 (15-77)||(43863484-43863546)
chr3 (27-76)||(21307110-21307159)
chr3 (15-75)||(24241711-24241771)
chr3 (26-69)||(645741-645784)
chr3 (15-55)||(19475736-19475776)
chr3 (15-75)||(50168191-50168251)
chr3 (15-78)||(2105219-2105282)
[»] chr2 (30 HSPs)
chr2 (1-82)||(10480255-10480336)
chr2 (1-75)||(11794031-11794105)
chr2 (1-78)||(11532111-11532188)
chr2 (1-78)||(7684580-7684657)
chr2 (15-78)||(769521-769584)
chr2 (15-77)||(1583330-1583392)
chr2 (15-77)||(2925140-2925202)
chr2 (15-77)||(33188787-33188849)
chr2 (15-77)||(39630715-39630777)
chr2 (15-75)||(8736501-8736561)
chr2 (15-75)||(35047201-35047261)
chr2 (15-78)||(3092735-3092798)
chr2 (15-77)||(7309434-7309496)
chr2 (15-81)||(19231011-19231076)
chr2 (15-73)||(21504939-21504997)
chr2 (17-75)||(32839188-32839246)
chr2 (15-72)||(19193746-19193803)
chr2 (15-76)||(44256123-44256184)
chr2 (15-75)||(8735965-8736025)
chr2 (15-75)||(13018234-13018294)
chr2 (27-83)||(17906143-17906199)
chr2 (17-75)||(14306364-14306422)
chr2 (17-79)||(31703919-31703981)
chr2 (15-78)||(11141794-11141857)
chr2 (15-77)||(19072320-19072382)
chr2 (15-77)||(41585192-41585254)
chr2 (17-81)||(7611413-7611477)
chr2 (25-75)||(28021706-28021756)
chr2 (155-245)||(4746680-4746766)
chr2 (20-69)||(6996371-6996420)
[»] chr6 (12 HSPs)
chr6 (1-77)||(34364880-34364956)
chr6 (1-75)||(13487411-13487485)
chr6 (2-75)||(34244843-34244916)
chr6 (1-75)||(29889296-29889371)
chr6 (15-76)||(8475618-8475679)
chr6 (15-79)||(1195793-1195857)
chr6 (17-77)||(15615918-15615978)
chr6 (15-75)||(1368965-1369025)
chr6 (17-75)||(10105497-10105555)
chr6 (17-77)||(724809-724869)
chr6 (27-79)||(6357821-6357873)
chr6 (17-73)||(31413351-31413407)
[»] chr5 (31 HSPs)
chr5 (1-75)||(20320529-20320603)
chr5 (1-77)||(12064316-12064392)
chr5 (1-77)||(25935149-25935224)
chr5 (15-77)||(32249647-32249709)
chr5 (1-73)||(19533769-19533841)
chr5 (1-75)||(37722754-37722828)
chr5 (15-75)||(12480389-12480449)
chr5 (15-75)||(13390962-13391022)
chr5 (17-83)||(15270409-15270475)
chr5 (15-73)||(28489951-28490009)
chr5 (15-77)||(40089410-40089472)
chr5 (15-77)||(41761742-41761804)
chr5 (15-67)||(38178813-38178865)
chr5 (15-67)||(38206037-38206089)
chr5 (15-78)||(927790-927853)
chr5 (17-75)||(6771823-6771881)
chr5 (15-80)||(15579993-15580059)
chr5 (15-77)||(22304732-22304794)
chr5 (15-72)||(22304672-22304729)
chr5 (15-77)||(28490395-28490458)
chr5 (15-75)||(17541884-17541944)
chr5 (27-78)||(32317175-32317225)
chr5 (17-75)||(35111702-35111760)
chr5 (17-74)||(37091078-37091135)
chr5 (42-79)||(37145362-37145399)
chr5 (1-42)||(37145395-37145435)
chr5 (33-73)||(17492691-17492731)
chr5 (17-77)||(33995442-33995502)
chr5 (15-76)||(8255446-8255507)
chr5 (15-84)||(33146570-33146639)
chr5 (34-78)||(41789591-41789634)
[»] chr4 (25 HSPs)
chr4 (1-77)||(10633167-10633243)
chr4 (1-77)||(21012437-21012513)
chr4 (1-75)||(31473985-31474059)
chr4 (10-77)||(3803709-3803776)
chr4 (15-72)||(47108708-47108765)
chr4 (15-75)||(40547768-40547828)
chr4 (15-74)||(27284221-27284280)
chr4 (15-78)||(46242619-46242682)
chr4 (17-75)||(30303610-30303668)
chr4 (15-72)||(42776573-42776630)
chr4 (15-75)||(2126326-2126386)
chr4 (15-75)||(19461266-19461326)
chr4 (15-75)||(35470612-35470672)
chr4 (15-75)||(42775780-42775840)
chr4 (17-75)||(21782463-21782521)
chr4 (15-73)||(31948061-31948119)
chr4 (15-77)||(41139960-41140022)
chr4 (26-72)||(5579654-5579700)
chr4 (15-77)||(28751742-28751804)
chr4 (23-71)||(16299781-16299829)
chr4 (17-77)||(24705820-24705880)
chr4 (17-77)||(54566664-54566724)
chr4 (15-74)||(56118170-56118229)
chr4 (25-75)||(16516666-16516716)
chr4 (15-48)||(26534976-26535009)
[»] chr8 (24 HSPs)
chr8 (1-77)||(30444804-30444880)
chr8 (1-80)||(23011870-23011949)
chr8 (15-73)||(36103250-36103308)
chr8 (15-75)||(29611812-29611872)
chr8 (15-75)||(44346221-44346281)
chr8 (15-74)||(31980047-31980106)
chr8 (15-77)||(14727-14789)
chr8 (15-73)||(13145073-13145131)
chr8 (15-77)||(33376827-33376889)
chr8 (15-69)||(40733641-40733695)
chr8 (15-77)||(43185469-43185531)
chr8 (15-75)||(29256913-29256973)
chr8 (15-75)||(35978592-35978652)
chr8 (15-74)||(10593562-10593620)
chr8 (15-74)||(31976666-31976725)
chr8 (15-73)||(26519984-26520042)
chr8 (15-77)||(33986486-33986548)
chr8 (15-75)||(29482341-29482401)
chr8 (15-79)||(28190227-28190291)
chr8 (24-75)||(9983146-9983197)
chr8 (18-77)||(14013267-14013326)
chr8 (15-77)||(1087844-1087906)
chr8 (17-62)||(7079780-7079825)
chr8 (15-84)||(34009178-34009247)
[»] chr7 (27 HSPs)
chr7 (1-75)||(26161987-26162060)
chr7 (1-82)||(29639056-29639138)
chr7 (1-75)||(6498614-6498688)
chr7 (15-77)||(14602769-14602831)
chr7 (1-74)||(31632857-31632928)
chr7 (15-75)||(14790557-14790617)
chr7 (15-75)||(43791511-43791571)
chr7 (15-77)||(39342158-39342220)
chr7 (15-80)||(35456294-35456359)
chr7 (17-73)||(38320770-38320825)
chr7 (15-77)||(2411801-2411863)
chr7 (15-77)||(40496208-40496270)
chr7 (15-75)||(23548119-23548179)
chr7 (15-75)||(28538677-28538737)
chr7 (15-75)||(36328328-36328388)
chr7 (15-75)||(42817012-42817072)
chr7 (15-78)||(30587427-30587490)
chr7 (17-75)||(37460470-37460528)
chr7 (17-75)||(45181757-45181814)
chr7 (27-75)||(35488714-35488761)
chr7 (15-75)||(45984823-45984883)
chr7 (15-75)||(45989183-45989243)
chr7 (15-75)||(32651013-32651073)
chr7 (17-76)||(40495691-40495750)
chr7 (18-75)||(1580381-1580439)
chr7 (18-75)||(26416413-26416469)
chr7 (15-71)||(30080312-30080368)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-74)||(11305-11378)
[»] scaffold0169 (1 HSPs)
scaffold0169 (15-77)||(4508-4570)
[»] scaffold0417 (1 HSPs)
scaffold0417 (15-72)||(11499-11556)
[»] scaffold0301 (1 HSPs)
scaffold0301 (15-62)||(7641-7688)
[»] scaffold0129 (1 HSPs)
scaffold0129 (15-56)||(19326-19367)
[»] scaffold0318 (1 HSPs)
scaffold0318 (27-75)||(3358-3406)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 75 - 245
Target Start/End: Complemental strand, 1389515 - 1389345
Alignment:
Q  75 taaaggaattattactatcatcagattcaattgttatatgaagtgtagtttgctcnnnnnnnattattaatattatagtagggtttccttagaaacatca 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  1389515 taaaggaattattactatcatcagattcaattgttatatgaagtgtagtttgctctttttttattattaatattatagtagggtttccttagaaacatca 1389416  T
Q  175 cataaaatttaaaggcttaggatacttgctaactacctttgtttctattactattcccttgtccccttcat 245  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  1389415 cataaaatttaaaggcttaggatgcttgctaactacctttgtttctattactattcccttgttcccttcat 1389345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 47541925 - 47541848
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 78  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  47541925 caaatactttgaggtaaattgcctagaattttaaattctttaaaatttctaaattacctcatccaaacacactctaaa 47541848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 26501016 - 26500947
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacac 70  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26501016 caaatactttgaggtaaattacctagaattttaaattctttaaaattttcaaattacctcatccaaacac 26500947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 47165149 - 47165077
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 73  Q
    ||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  47165149 caaatactttgaggtaaattacctaaaattttaaattctttaaaattttcaaattacctcatccaaacacact 47165077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 24273157 - 24273084
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24273157 caaatactttgagataa-ttgcgtagaattttaaattctttaaaatttccaaattacctcatccaaacacactct 24273084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 946869 - 946929
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  946869 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 946929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 15467546 - 15467486
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  15467546 taaattgcctagaattctaaattctttaaaatttcttaattacctcatccaaacacactct 15467486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 35499546 - 35499598
Alignment:
Q  23 ctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  35499546 ctagaattctaaattctttaaaattttcaaattacttcatccaaacacactct 35499598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 220642 - 220702
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||||||||||| |||||||| || ||||||  ||||||||||||||||||||||||    
T  220642 taaattgcctagaattctaaattctctataatttttcaattacctcatccaaacacactct 220702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 12293080 - 12293020
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||||||||||| |||||||||| | |||| | ||||||||||||||||||||||||||    
T  12293080 aattgcctagaattctaaattctttgagatttcccaattacctcatccaaacacactctaa 12293020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 41481009 - 41480949
Alignment:
Q  20 tgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaagg 80  Q
    |||||| |||||||||| ||||||||  || ||||||||||||||||||||||||| ||||    
T  41481009 tgcctaaaattttaaatgctttaaaaaatttaaattacctcatccaaacacactcttaagg 41480949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 28632186 - 28632124
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||||||||||||| |||||| |||| |||||   ||||| ||||||||||||||||||||    
T  28632186 taaattgcctagaattctaaattttttataatttctcaattatctcatccaaacacactctaa 28632124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 6470289 - 6470228
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttc-aaattacctcatccaaacacactct 75  Q
    |||||| ||||||||| |||||||||||||| ||||  |||| |||||||||||||||||||    
T  6470289 taaattacctagaattctaaattctttaaaaatttctcaattgcctcatccaaacacactct 6470228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 10166986 - 10167034
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatcca 65  Q
    ||||||||||||||||||||||||||||||||   |||||||| |||||    
T  10166986 aattgcctagaattttaaattctttaaaatttatcaattaccttatcca 10167034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 21267406 - 21267346
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||||| ||||  ||||||||||||||||   ||||| ||||||||||||||||||    
T  21267406 taaattgcctataattcgaaattctttaaaatttctcaattatctcatccaaacacactct 21267346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 37036562 - 37036502
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||| ||||||||| ||||||||| |||||||   ||||||| ||||||||||||||||||    
T  37036562 aattacctagaattctaaattcttcaaaatttcttaattaccccatccaaacacactctaa 37036502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 37446941 - 37446881
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||| ||||||||| ||||||||| |||||||   ||||||| ||||||||||||||||||    
T  37446941 aattacctagaattataaattcttcaaaatttcttaattaccccatccaaacacactctaa 37446881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 4663808 - 4663859
Alignment:
Q  24 tagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||||||||| |||||||||   |||||||||||||||||| |||||    
T  4663808 tagaattttaaattccttaaaatttgtcaattacctcatccaaacaaactct 4663859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 23969497 - 23969438
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactcta 76  Q
    |||||| || |||||||||||||||||||  ||  ||||||| |||||||||||||||||    
T  23969497 aattgcttataattttaaattctttaaaaaatttcaattaccccatccaaacacactcta 23969438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 31166701 - 31166764
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 78  Q
    ||||||| ||||| || ||||||||||| |||||   |||||||| ||||||||||||||||||    
T  31166701 taaattgactagatttctaaattctttacaatttctcaattacctgatccaaacacactctaaa 31166764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 32128574 - 32128633
Alignment:
Q  16 aaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||| |||| ||||||||||||||||||||||   ||||||||| | ||||||||||||    
T  32128574 aaattacctaaaattttaaattctttaaaatttctcaattacctcgttcaaacacactct 32128633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 37447486 - 37447424
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattt-tcaaattacctcatccaaacacactctaa 77  Q
    |||||| ||||||||| ||||||||| ||||||| |||||| || |||||||||||||||||||    
T  37447486 taaattacctagaattctaaattcttcaaaatttctcaaat-acttcatccaaacacactctaa 37447424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 41822133 - 41822078
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacac 70  Q
    |||||||||||||||| |||||||| ||||||||   |||||| ||||||||||||    
T  41822133 taaattgcctagaattctaaattctgtaaaatttctcaattacttcatccaaacac 41822078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 44571680 - 44571738
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 73  Q
    |||||| ||||| ||| ||||||||||| ||||| | |||||||||||| |||||||||    
T  44571680 taaattacctaggattctaaattctttataatttcccaattacctcatcgaaacacact 44571738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 21088294 - 21088258
Alignment:
Q  39 tttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  21088294 tttaaaattttccaattacctcattcaaacacactct 21088258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 37448029 - 37447969
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||| ||||||||| ||||||| | |||||||   ||||||| ||||||||||||||||||    
T  37448029 aattccctagaattctaaattcatcaaaatttctcaattaccccatccaaacacactctaa 37447969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 8762262 - 8762336
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8762262 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 8762336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 19475952 - 19476031
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaagg 80  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  19475952 caaatactttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacctcatccaaacacactcttaagg 19476031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 33871838 - 33871761
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 78  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  33871838 caaatactttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacctcatccacacacactctaaa 33871761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 47714426 - 47714488
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  47714426 taaattgcctagaatttgaaattctttaaaatttccaaattacctcatccaaacacactctaa 47714488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 54761500 - 54761424
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||||||| |  ||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  54761500 caaatactttaaagtaaattgtctaaaattttaaattctgtaaaattttcaaattacctcatccaaacacactctaa 54761424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 34396204 - 34396148
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacaca 71  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  34396204 taaattgcctagaattttaaactctttaaaattttccaattacctcatccaaacaca 34396148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 7977040 - 7977107
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaaggaa 82  Q
    |||||||||||| |||  |||||||||||||||| | |||||||||||||||||||||||||||||||    
T  7977040 taaattgcctaggattcgaaattctttaaaatttcccaattacctcatccaaacacactctaaaggaa 7977107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 28181858 - 28181800
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 73  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  28181858 taaattgcctagaattctaaattctttaaaattttccaattacctcgtccaaacacact 28181800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 48948071 - 48948131
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||||||||||| ||||||||||||||||||  |||||||||||||||||| |||||    
T  48948071 taaattgcctagaattctaaattctttaaaatttttcaattacctcatccaaacatactct 48948131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 21731408 - 21731471
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 78  Q
    ||||||||||||||||||||||||| | ||||||   |||||||||||||||||||||||||||    
T  21731408 taaattgcctagaattttaaattctcttaaatttatcaattacctcatccaaacacactctaaa 21731471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 52527508 - 52527563
Alignment:
Q  24 tagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaag 79  Q
    ||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||    
T  52527508 tagaattctaaattttttaaaattttccaattacctcatccaaacacactctaaag 52527563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 34089065 - 34089127
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||||||||||||| |||||||||||||||||   |||||| |||||||||||||||||||    
T  34089065 taaattgcctagaattctaaattctttaaaatttctcaattacatcatccaaacacactctaa 34089127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 38506544 - 38506482
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    ||||||||||| |||| ||||||||||||||||||| |||||| |||| ||||||||||||||    
T  38506544 taaattgcctaaaattctaaattctttaaaattttccaattacttcattcaaacacactctaa 38506482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 48824694 - 48824637
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacac 72  Q
    ||||||||||| |||| ||||||||||||||||||| |||||||| ||||||||||||    
T  48824694 taaattgcctaaaattctaaattctttaaaattttccaattaccttatccaaacacac 48824637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 36397571 - 36397511
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||| |||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  36397571 taaattgtctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 36397511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 53470011 - 53469951
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||| ||||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  53470011 taaattacctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 53469951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 28092152 - 28092206
Alignment:
Q  14 ataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 69  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||    
T  28092152 ataaattgcctagaattt-aaattctttaaaattttccaattagctcatccaaaca 28092206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 35279530 - 35279467
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 78  Q
    |||||| | ||||||| ||||||||||||||||| | |||| ||||||||||||||||||||||    
T  35279530 taaattacttagaattctaaattctttaaaatttcccaattgcctcatccaaacacactctaaa 35279467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 671248 - 671186
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    ||||||| ||| ||||||| ||||||||||||||   ||||||||||||||||||||||||||    
T  671248 taaattgtctataattttatattctttaaaatttctcaattacctcatccaaacacactctaa 671186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 43863546 - 43863484
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||| ||||||||| |||||||||||||||||   ||||||||| ||||||||||||||||    
T  43863546 taaattacctagaattctaaattctttaaaatttctcaattacctcgtccaaacacactctaa 43863484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 21307159 - 21307110
Alignment:
Q  27 aattttaaattctttaaaattttcaaattacctcatccaaacacactcta 76  Q
    |||| ||||||||||||||||| | |||||||||||||||||||||||||    
T  21307159 aattctaaattctttaaaatttcccaattacctcatccaaacacactcta 21307110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 24241771 - 24241711
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||| |||| ||| |||||||||||||||||   ||||||||||||||||||||||||    
T  24241771 taaattgtctaggattctaaattctttaaaatttctcaattacctcatccaaacacactct 24241711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 645784 - 645741
Alignment:
Q  26 gaattttaaattctttaaaattttcaaattacctcatccaaaca 69  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||    
T  645784 gaattctaaattctttaaaattttccaattacctcatccaaaca 645741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 19475736 - 19475776
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaatt 55  Q
    ||||| |||||||||||||||||||||||||||| ||||||    
T  19475736 taaatagcctagaattttaaattctttaaaatttccaaatt 19475776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 50168251 - 50168191
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||| |||||| |  ||||||||||||||   ||||||||||||||||||||||||    
T  50168251 taaattgccaagaattctcgattctttaaaatttctcaattacctcatccaaacacactct 50168191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 2105219 - 2105282
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 78  Q
    |||||| ||||||||| ||||||||| |||||||   ||||||  |||||||||||||||||||    
T  2105219 taaattacctagaattataaattcttcaaaatttctcaattactccatccaaacacactctaaa 2105282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 10480255 - 10480336
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaaggaa 82  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10480255 caaatactttgaggtaaattgcctagaattttaaattctttaaaattttcaaattacctcatccaagcacactctaaaggaa 10480336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 11794031 - 11794105
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11794031 caaatactttgaggtaaattgtctagaattttaaattctttaaaattttcaaattacctaatccaaacacactct 11794105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 11532188 - 11532111
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 78  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| || ||||||| |||||||||||||| ||||||    
T  11532188 caaatactttgaggtaaattgcctagaattttaaattctttaaaacttccaaattatctcatccaaacacattctaaa 11532111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 7684580 - 7684657
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 78  Q
    ||||||||||||  ||||| ||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  7684580 caaatactttgaagtaaatggcctaaaattttaaattctttaaaatttttaaattaccttatccaaacacactctaaa 7684657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 769521 - 769584
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 78  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||    
T  769521 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaaa 769584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 1583392 - 1583330
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  1583392 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaa 1583330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 2925140 - 2925202
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||||||||||||| ||||||||||||||||| | |||||| |||||||||||||||||||    
T  2925140 taaattgcctagaattctaaattctttaaaatttcccaattacttcatccaaacacactctaa 2925202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 33188849 - 33188787
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  33188849 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaa 33188787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 39630715 - 39630777
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    ||||||||||||||||||||||| ||||||||||   ||||||||||||||||||||||||||    
T  39630715 taaattgcctagaattttaaattttttaaaatttctcaattacctcatccaaacacactctaa 39630777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 8736501 - 8736561
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  8736501 taaattgggtagaattttaaattctttaaaattttcaaataacctcatccaaatacactct 8736561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 35047261 - 35047201
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||    
T  35047261 taaattgcctagaattttaaattctttaaaatttctcaattaccccatccaaacacactct 35047201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 3092735 - 3092798
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 78  Q
    |||||| ||||||||| |||||||||||||||||   |||||||||||||||||||||||||||    
T  3092735 taaatttcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaaa 3092798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 7309496 - 7309434
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||||| ||||||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  7309496 taaattgcttagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaa 7309434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 19231076 - 19231011
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaagga 81  Q
    |||||||||||||||| ||| |||||||||||||   ||||||||||||||||||||||||||||||    
T  19231076 taaattgcctagaattctaa-ttctttaaaatttctcaattacctcatccaaacacactctaaagga 19231011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 21504939 - 21504997
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 73  Q
    |||||||| ||||||| ||||||||||||||||| | ||||||||||||||||||||||    
T  21504939 taaattgcttagaattctaaattctttaaaatttcccaattacctcatccaaacacact 21504997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 32839246 - 32839188
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||    
T  32839246 aattgcctagaattttaaattctttaaaatttctcaattacctcatctaaacacactct 32839188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 19193803 - 19193746
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacac 72  Q
    ||||||||||| |||||||| || |||||||||||| |||||||||||||||||||||    
T  19193803 taaattgcctaaaattttaatttttttaaaattttccaattacctcatccaaacacac 19193746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 44256123 - 44256184
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactcta 76  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||||||||| ||||||    
T  44256123 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacatactcta 44256184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 8736025 - 8735965
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||| ||| ||| ||||||||||||||||| | ||||||||||||||||||||||||    
T  8736025 taaattgcttaggattctaaattctttaaaatttcccaattacctcatccaaacacactct 8735965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 13018234 - 13018294
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||| ||||||||||||||||||||| |||||   ||||||||||||||||||||||||    
T  13018234 taaattacctagaattttaaattctttataatttctcaattacctcatccaaacacactct 13018294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 17906143 - 17906199
Alignment:
Q  27 aattttaaattctttaaaattttcaaattacctcatccaaacacactctaaaggaat 83  Q
    |||||||||||||||| ||||||  |||||||||||||||||||||||||| |||||    
T  17906143 aattttaaattctttataatttttcaattacctcatccaaacacactctaagggaat 17906199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 14306422 - 14306364
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||| |||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  14306422 aattgtctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 14306364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 31703981 - 31703919
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaag 79  Q
    ||||| |||||||| |||||| | |||||||||| ||||||||||| ||||||||||||||||    
T  31703981 aattgactagaattctaaattatctaaaattttccaattacctcattcaaacacactctaaag 31703919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 11141794 - 11141857
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 78  Q
    ||||||| |||| ||| |||||||||||||||||   |||||||||||||||||||||| ||||    
T  11141794 taaattgtctaggattctaaattctttaaaatttctcaattacctcatccaaacacactttaaa 11141857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 19072320 - 19072382
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||| ||||| ||| |||||||||||||||||   ||||| ||||||||||||||||||||    
T  19072320 taaattacctaggattctaaattctttaaaatttctcaattatctcatccaaacacactctaa 19072382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 41585254 - 41585192
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    ||||||| | |||||| |||||||||||||||||   |||||||||||||||| |||||||||    
T  41585254 taaattgtcaagaattctaaattctttaaaatttatcaattacctcatccaaagacactctaa 41585192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 7611477 - 7611413
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaagga 81  Q
    |||| ||||||||||||||||||| |||||||   ||||||  |||||||||||||| |||||||    
T  7611477 aattacctagaattttaaattcttcaaaatttctcaattactccatccaaacacactttaaagga 7611413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 28021756 - 28021706
Alignment:
Q  25 agaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||| |||||||||||||||||   ||||| ||||||||||||||||||    
T  28021756 agaattctaaattctttaaaatttctcaattagctcatccaaacacactct 28021706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 4746766 - 4746680
Alignment:
Q  155 gggtttccttagaaacatcacataaaatttaaaggcttaggatacttgctaactacctttgtttctattactattcccttgtccccttcat 245  Q
    |||||||||||||||| |||| |||  || ||||| |||||||    || ||||||| |||||||||||||| |||| || ||||||||||    
T  4746766 gggtttccttagaaacttcacgtaatgttgaaaggtttaggat----gccaactaccgttgtttctattactcttccgttttccccttcat 4746680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 6996420 - 6996371
Alignment:
Q  20 tgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 69  Q
    ||||||||||| |||||||||  ||| |||| ||||||||||||||||||    
T  6996420 tgcctagaattctaaattcttacaaaatttctaattacctcatccaaaca 6996371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 34364880 - 34364956
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34364880 caaatactttgaggtaaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 34364956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 13487411 - 13487485
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13487411 caaatactttgagataaattgtctagaattttaaattctttaaaatttccaaattacctcatccaaacacactct 13487485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 34244916 - 34244843
Alignment:
Q  2 aaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34244916 aaatactttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacctcatccaaacacactct 34244843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 29889371 - 29889296
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattcttt-aaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||||||| | ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  29889371 caaatactttgaggttaattgcctagaattttaaattctttaaaaaatttcaaattacctcatccaaacacactct 29889296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 8475618 - 8475679
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactcta 76  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||| ||||||||||||    
T  8475618 taaattgcctagaattctaaattctttaaaatttctcaattacctcatctaaacacactcta 8475679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 1195793 - 1195857
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaag 79  Q
    ||||||||||||||||| ||||||| ||||||||   ||||||||||| ||||||||||||||||    
T  1195793 taaattgcctagaatttcaaattctctaaaatttctcaattacctcattcaaacacactctaaag 1195857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 15615978 - 15615918
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||||||  |||||||||||||||||||||   ||||||||||||||||||||||||||    
T  15615978 aattgcctaatattttaaattctttaaaatttatcaattacctcatccaaacacactctaa 15615918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 1368965 - 1369025
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||| ||||||||||||||||||||| |||||   ||||||||| ||||||||||||||    
T  1368965 taaattacctagaattttaaattctttataatttctcaattacctcgtccaaacacactct 1369025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 10105497 - 10105555
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||| || | |||||||||||||||||   ||||||||||||||||||||||||    
T  10105497 aattgcctacaagtctaaattctttaaaatttctcaattacctcatccaaacacactct 10105555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 724869 - 724809
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||| ||||||||| ||||||||| |||| ||   ||||||||||||||||||||||||||    
T  724869 aattacctagaattctaaattcttaaaaaattctcaattacctcatccaaacacactctaa 724809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 6357873 - 6357821
Alignment:
Q  27 aattttaaattctttaaaattttcaaattacctcatccaaacacactctaaag 79  Q
    |||| ||||||||| ||||||| | ||||||||| ||||||||||||||||||    
T  6357873 aattctaaattcttcaaaatttcccaattacctcgtccaaacacactctaaag 6357821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 31413351 - 31413407
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 73  Q
    |||| ||||||||| ||||||||| |||||||   ||||||| ||||||||||||||    
T  31413351 aattccctagaattctaaattcttcaaaatttctcaattaccccatccaaacacact 31413407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 20320603 - 20320529
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20320603 caaatactttgaggtaaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 20320529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12064392 - 12064316
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12064392 caaatactttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacctcatccaaacacactctaa 12064316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 25935224 - 25935149
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  25935224 caaatactttgagataa-ttgcctagaattttaaattctttaaaatttctaaattacctcatccaaacacactctaa 25935149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 32249709 - 32249647
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32249709 taaattgcctagaattctaaattctttaaaattttcaaattacctcatccaaacacactctaa 32249647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 19533841 - 19533769
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 73  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  19533841 caaatattttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacctcattcaaacacact 19533769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 37722828 - 37722754
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||   |||||||||||||||    
T  37722828 caaatactttgaggtaaattacctagaattttaaattctttaaaatttccaaattactcaatccaaacacactct 37722754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 12480389 - 12480449
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  12480389 taaattgcttagaattctaaattctttaaaattttccaattacctcatccaaacacactct 12480449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 13391022 - 13390962
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||| ||||||| ||||||||||||||||| | ||||||||||||||||||||||||    
T  13391022 taaattgcttagaattctaaattctttaaaatttcccaattacctcatccaaacacactct 13390962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 15270475 - 15270409
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaaggaat 83  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||| |||||||| ||||| |||||    
T  15270475 aattacctagaattctaaattctttaaaattttccaattacctcattcaaacacattctaagggaat 15270409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 28489951 - 28490009
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 73  Q
    |||||||||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  28489951 taaattgcctaggattctaaattccttaaaattttctaattacctcatccaaacacact 28490009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 40089472 - 40089410
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||||||||| | | ||||||||||||||||| | ||||||||||||||||||||||||||    
T  40089472 taaattgcctaggaatctaaattctttaaaatttcctaattacctcatccaaacacactctaa 40089410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 41761804 - 41761742
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    ||||||||||| |||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  41761804 taaattgcctaaaattctaaattctttaaaatttctcaattacctcatccaaacacactctaa 41761742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 38178865 - 38178813
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaa 67  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  38178865 taaattgcctataattctaaattctttaaaattttccaattacctcatccaaa 38178813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 38206089 - 38206037
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaa 67  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  38206089 taaattgcctataattctaaattctttaaaattttccaattacctcatccaaa 38206037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 927790 - 927853
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 78  Q
    ||||||| |||||||| |||||||||||||||||   ||||||||||| |||||||||||||||    
T  927790 taaattgtctagaattctaaattctttaaaatttctcaattacctcattcaaacacactctaaa 927853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 6771881 - 6771823
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||| ||||||| ||||||||||||||||| | ||||| ||||||||||||||||||    
T  6771881 aattgcatagaattctaaattctttaaaatttcccaattaactcatccaaacacactct 6771823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 15580059 - 15579993
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaatta-cctcatccaaacacactctaaagg 80  Q
    ||||||| ||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| ||||    
T  15580059 taaattgtctagaattttaaattttttaaaatttcctaattaccctcatccaaacacactcttaagg 15579993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 22304794 - 22304732
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||||||||| ||| ||||||||||||||||| | |||||||||||| ||| |||||||||    
T  22304794 taaattgcctaggattctaaattctttaaaatttcccaattacctcatcaaaatacactctaa 22304732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 22304672 - 22304729
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacac 72  Q
    ||||||| |||||||| |||||||||||||||||   |||||||||||||||||||||    
T  22304672 taaattgtctagaattctaaattctttaaaatttctcaattacctcatccaaacacac 22304729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 28490395 - 28490458
Alignment:
Q  15 taaattgcctagaattttaaattcttt--aaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||||||| ||||||||||||||||  |||| |||| ||||||||||||||||||||||||||    
T  28490395 taaattgccttgaattttaaattctttaaaaaaatttc-aattacctcatccaaacacactctaa 28490458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 17541944 - 17541884
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||| |||| ||| |||||||||||||||||   ||||||||||||||||||||||||    
T  17541944 taaattgtctaggattctaaattctttaaaatttctcaattacctcatccaaacacactct 17541884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 32317175 - 32317225
Alignment:
Q  27 aattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 78  Q
    |||||||||||||||||||||||| |||||||| |||||||||| |||||||    
T  32317175 aattttaaattctttaaaattttc-aattacctaatccaaacactctctaaa 32317225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 35111702 - 35111760
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||| ||||||||| |||||||||||||||||   ||||||| ||||||||||||||||    
T  35111702 aattccctagaattctaaattctttaaaatttctcaattaccccatccaaacacactct 35111760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 37091078 - 37091135
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 74  Q
    |||| |||||| || |||||||||||| |||| | |||||||||||||||||||||||    
T  37091078 aattacctagagttctaaattctttaagatttaccaattacctcatccaaacacactc 37091135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 37145362 - 37145399
Alignment:
Q  42 aaaattttcaaattacctcatccaaacacactctaaag 79  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  37145362 aaaatttccaaattacctcatccaaacacactctaaag 37145399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37145435 - 37145395
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattcttta 42  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  37145435 caaatactttgagataa-ttgcctagaattttaaattcttta 37145395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 17492731 - 17492691
Alignment:
Q  33 aaattctttaaaattttcaaattacctcatccaaacacact 73  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  17492731 aaattttttaaaattttctaattacctcatccaaacacact 17492691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 33995502 - 33995442
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    ||||||||| |||| ||| |||||||||||||   |||||| |||||||||||||||||||    
T  33995502 aattgcctaaaattctaatttctttaaaatttgtcaattacatcatccaaacacactctaa 33995442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 8255446 - 8255507
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactcta 76  Q
    ||||||||||| |||| ||||||||| |||||||   ||||| |||||||||||| ||||||    
T  8255446 taaattgcctaaaattataaattcttcaaaatttctcaattatctcatccaaacatactcta 8255507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 33146570 - 33146639
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaaggaatt 84  Q
    |||||||||||  ||| |||||||||| ||||||   || ||||||||||||||||||||| ||| ||||    
T  33146570 taaattgcctaagattctaaattctttgaaatttctcaactacctcatccaaacacactcttaagaaatt 33146639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 41789591 - 41789634
Alignment:
Q  34 aattctttaaaattttcaaattacctcatccaaacacactctaaa 78  Q
    ||||||||||||||||||  ||||||| |||||||||||||||||    
T  41789591 aattctttaaaattttcat-ttacctcgtccaaacacactctaaa 41789634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10633167 - 10633243
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10633167 caaatactttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacctcatccaaacacactctaa 10633243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 21012513 - 21012437
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||| |||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21012513 caaatattttgaggtaaattgtctagaattttaaattctttaaaatttttaaattacctcatccaaacacactctaa 21012437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 31473985 - 31474059
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||| |||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31473985 caaataatttgaggtaaattgtctagaattttaaattctttaaaatttccaaattacctcatccaaacacactct 31474059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 3803709 - 3803776
Alignment:
Q  10 tgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3803709 tgaggtaagttgcctaaaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 3803776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 47108708 - 47108765
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacac 72  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  47108708 taaattgcctagaattctaaattctttaaaattttccaattacctcatccaaacacac 47108765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 40547828 - 40547768
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  40547828 taaattgcctagaattttaaattctttaaaatttctcaattacctcatccaaacacactct 40547768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 27284280 - 27284221
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 74  Q
    |||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  27284280 taaattgcctagaattctaaattctttaaaattttcaaattatatcatccaaacacactc 27284221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 46242682 - 46242619
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 78  Q
    |||||||| ||||||| ||||||||||||||||| | |||||||||||||||||||||||||||    
T  46242682 taaattgcttagaattataaattctttaaaatttcccaattacctcatccaaacacactctaaa 46242619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 30303610 - 30303668
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||    
T  30303610 aattgcctagaattttaaattctttaaaatttctcaattatctcatccaaacacactct 30303668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 42776573 - 42776630
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacac 72  Q
    |||||||| ||| ||| ||||||||||||||||||| |||||||||||||||||||||    
T  42776573 taaattgcttaggattctaaattctttaaaattttccaattacctcatccaaacacac 42776630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 2126326 - 2126386
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||||||||||| |||||||||||||||||   ||||||| ||||||||||||||||    
T  2126326 taaattgcctagaattctaaattctttaaaatttctcaattaccccatccaaacacactct 2126386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 19461326 - 19461266
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||||| |||||||||||||||||||  ||| ||||||||||| ||||||||||||    
T  19461326 taaattgcctaaaattttaaattctttaaaaaattctaattacctcattcaaacacactct 19461266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 35470612 - 35470672
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||||||||||| |||||||||||||||||   |||||| |||||||||||||||||    
T  35470612 taaattgcctagaattctaaattctttaaaatttctcaattacatcatccaaacacactct 35470672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 42775840 - 42775780
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||| ||||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  42775840 taaatttcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 42775780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 21782463 - 21782521
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||| |||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  21782463 aattgtctagaattctaaattctttaaaatttcacaattacctcatccaaacacactct 21782521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 31948061 - 31948119
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 73  Q
    ||||||||||| ||||||||||||||||||| |||| ||||||||| ||||||| ||||    
T  31948061 taaattgcctaaaattttaaattctttaaaagtttccaattacctcgtccaaacgcact 31948119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 41139960 - 41140022
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||||| |||||||||||||||||||||||||   |||||| || ||||||||||||||||    
T  41139960 taaattgcttagaattttaaattctttaaaatttctcaattacttcttccaaacacactctaa 41140022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 5579700 - 5579654
Alignment:
Q  26 gaattttaaattctttaaaattttcaaattacctcatccaaacacac 72  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||||||    
T  5579700 gaattttaaattcttcaaaattttctaattacctcattcaaacacac 5579654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 28751804 - 28751742
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    ||||||||||| |||| |||||| ||||||||||   ||||| ||||||||||||||||||||    
T  28751804 taaattgcctataattctaaattttttaaaatttctcaattatctcatccaaacacactctaa 28751742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 16299829 - 16299781
Alignment:
Q  23 ctagaattttaaattctttaaaattttcaaattacctcatccaaacaca 71  Q
    ||||||||||||||||| ||| |||||| ||||||||||| ||||||||    
T  16299829 ctagaattttaaattctctaatattttccaattacctcattcaaacaca 16299781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 24705820 - 24705880
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||| |||| |||| ||||||||| ||||||||  ||||||| ||||||||||||||||||    
T  24705820 aattccctaaaattctaaattcttcaaaatttttcaattaccccatccaaacacactctaa 24705880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 54566664 - 54566724
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||| ||| ||||||||||||| |||||||||   ||||||| ||||||||||||||||||    
T  54566664 aattcccttgaattttaaattcattaaaatttctcaattaccccatccaaacacactctaa 54566724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 56118229 - 56118170
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 74  Q
    |||||||||||||||| | | |||| ||||||||   |||||||||||||||||||||||    
T  56118229 taaattgcctagaattctgagttctctaaaatttgtcaattacctcatccaaacacactc 56118170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 16516666 - 16516716
Alignment:
Q  25 agaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||| ||||||||| |||||||   ||||||||||||||||||||||||    
T  16516666 agaattctaaattcttcaaaatttctcaattacctcatccaaacacactct 16516716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 26534976 - 26535009
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattt 48  Q
    |||||||||||||||| |||||||||||||||||    
T  26534976 taaattgcctagaattctaaattctttaaaattt 26535009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 30444880 - 30444804
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  30444880 caaatactttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacttcatccaaacacactctaa 30444804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 23011870 - 23011949
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcc-aaacacactctaaagg 80  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||    
T  23011870 caaatactttgagataa-ttgcctagaattttaaattctttaaaatttctaaattacctcatccaaaacacactctaaagg 23011949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 36103250 - 36103308
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 73  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36103250 taaattgcctagaattttaaattctttaaaatttccaaattacctcatccaaacacact 36103308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 29611812 - 29611872
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||| ||||||||||||||||    
T  29611812 taaattgcctaaaattctaaattctttaaaattttccaattaccacatccaaacacactct 29611872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 44346281 - 44346221
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  44346281 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 44346221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 31980106 - 31980047
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 74  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||    
T  31980106 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactc 31980047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 14727 - 14789
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||||||||||||| |||||||||||||||||   |||| |||||||||||||||||||||    
T  14727 taaattgcctagaattctaaattctttaaaatttctcaatttcctcatccaaacacactctaa 14789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 13145073 - 13145131
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 73  Q
    |||||||||||||||||||||||||||||| ||| | |||||||||| |||||||||||    
T  13145073 taaattgcctagaattttaaattctttaaattttcccaattacctcacccaaacacact 13145131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 33376889 - 33376827
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||| ||||||||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  33376889 taaattacctagaattctaaattctttaaaatttatcaattacctcatccaaacacactctaa 33376827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 40733695 - 40733641
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 69  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  40733695 taaattgcctagaattttaaattctttaaaatttctcaattacctcatccaaaca 40733641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 43185469 - 43185531
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    ||||||| |||||||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  43185469 taaattgtctagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaa 43185531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 29256973 - 29256913
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||||||||||| |||||||||||||||||   ||||||||| ||||||||||||||    
T  29256973 taaattgcctagaattctaaattctttaaaatttctcaattacctcgtccaaacacactct 29256913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 35978652 - 35978592
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||| ||||||||||||||||||||||||||   |||| |||||||||||||||||||    
T  35978652 taaattgactagaattttaaattctttaaaatttctcaattgcctcatccaaacacactct 35978592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 10593562 - 10593620
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 74  Q
    ||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||||    
T  10593562 taaattgcctagaattttaaatt-tttaaaatttctcaattacctcatccaaacacactc 10593620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 31976725 - 31976666
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 74  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||||||| ||||||    
T  31976725 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaaaacactc 31976666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 26520042 - 26519984
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 73  Q
    ||||||||||||||||||||||||||||||||||   |||||| | |||||||||||||    
T  26520042 taaattgcctagaattttaaattctttaaaatttatcaattactttatccaaacacact 26519984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 33986486 - 33986548
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    ||||||||||||||||   |||||||||||||||   ||||||||||||||||||||||||||    
T  33986486 taaattgcctagaattccgaattctttaaaatttctcaattacctcatccaaacacactctaa 33986548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 29482401 - 29482341
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||| |||| |||| |||||||||||||||||   ||||||||||||||||||||||||    
T  29482401 taaatttcctataattctaaattctttaaaatttctcaattacctcatccaaacacactct 29482341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 28190291 - 28190227
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaag 79  Q
    |||||||| ||||||| ||| |||||| |||||||| ||||| ||||| |||| |||||||||||    
T  28190291 taaattgcgtagaattctaagttctttcaaattttcgaattatctcattcaaatacactctaaag 28190227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 9983146 - 9983197
Alignment:
Q  24 tagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||| ||||||||| |||||||   ||||||||||||||||||||||||    
T  9983146 tagaattctaaattcttcaaaatttctcaattacctcatccaaacacactct 9983197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 14013326 - 14013267
Alignment:
Q  18 attgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    ||||||||||||| ||||||| | ||||||||| ||||| ||| |||||| |||||||||    
T  14013326 attgcctagaattctaaattcatcaaaattttctaattaactcgtccaaatacactctaa 14013267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 1087906 - 1087844
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||| |||| |||| |||||||||||||||||   ||||||||||| |||||| |||||||    
T  1087906 taaatttcctaaaattctaaattctttaaaatttctcaattacctcattcaaacatactctaa 1087844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 7079780 - 7079825
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcat 62  Q
    |||| |||||||||||||||||||||||||||   |||||||||||    
T  7079780 aattacctagaattttaaattctttaaaatttctcaattacctcat 7079825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 34009178 - 34009247
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaaggaatt 84  Q
    |||||||||||  ||| |||||||||| ||||||   || ||||||||||||||||||||| ||| ||||    
T  34009178 taaattgcctaagattctaaattctttgaaatttctcaactacctcatccaaacacactcttaagaaatt 34009247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 26162060 - 26161987
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26162060 caaatactttgagataa-ttgcctagaattttaaattctttaaaatttccaaattacctcatccaaacacactct 26161987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 29639138 - 29639056
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaa-ttctttaaaattttcaaattacctcatccaaacacactctaaaggaa 82  Q
    ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  29639138 caaatactttgaggtaaattgcctagaatttaaaaattctttaaaattttcaaattacctcatccaaacacactctaagggaa 29639056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 6498688 - 6498614
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||||||| |||||||||||||||||||||   |||||||||| ||||||||||||||||||||||||||    
T  6498688 caaatactttgaggtaaattgcctagaattttaaagaatttaaaatttccaaattacctcatccaaacacactct 6498614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 14602831 - 14602769
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||    
T  14602831 taaattgcctagaattctaaattctttaaaatttttcaattacctcatccaaacacactctaa 14602769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 31632857 - 31632928
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 74  Q
    ||||||||||||| ||||||| ||||||||||||||||||  ||||||||||||||||| ||||||||||||||    
T  31632857 caaatactttgaggtaaattgtctagaattttaaattctt--aaattttcaaattaccttatccaaacacactc 31632928  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 14790557 - 14790617
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  14790557 taaattgcctaggattctaaattctttaaaattttccaattacctcatccaaacacactct 14790617  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 43791511 - 43791571
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  43791511 taaattgccaagaattctaaattctttaaaattttccaattacctcatccaaacacactct 43791571  T

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Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 39342220 - 39342158
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  39342220 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaa 39342158  T

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Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 35456294 - 35456359
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaagg 80  Q
    |||||||||||||||| |||||||||||||| |||  |||||||||||||||||||||||| ||||    
T  35456294 taaattgcctagaattctaaattctttaaaaattttcaattacctcatccaaacacactcttaagg 35456359  T

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Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 38320770 - 38320825
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 73  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  38320770 aattgcctagaattttaaattctttaaaattttc-aattaccacatccaaacacact 38320825  T

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Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 2411801 - 2411863
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||| ||||||    
T  2411801 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacactctctaa 2411863  T

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Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 40496208 - 40496270
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||||||||| |||||||    
T  40496208 taaattgcctagaattataaattctttaaaatttcttaattacctcatccaaacatactctaa 40496270  T

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Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 23548179 - 23548119
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||| ||||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  23548179 taaatttcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 23548119  T

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Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 28538737 - 28538677
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||||| |||| |||||||||||||||||   ||||||||||||||||||||||||    
T  28538737 taaattgcctaaaattctaaattctttaaaatttctcaattacctcatccaaacacactct 28538677  T

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Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 36328388 - 36328328
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||||||||||| |||||| ||||||||||   ||||||||||||||||||||||||    
T  36328388 taaattgcctagaattctaaattttttaaaatttctcaattacctcatccaaacacactct 36328328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 42817012 - 42817072
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||| ||||||||||    
T  42817012 taaattgcctagaattctaaattctttaaaatttctcaattacctcatcctaacacactct 42817072  T

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Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 30587490 - 30587427
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 78  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||| |||||||| ||| ||||    
T  30587490 taaattgcctagaattctaaattctctaaaattttccaattacctcgtccaaacatactataaa 30587427  T

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Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 37460528 - 37460470
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||| ||||||||||||||||||||||| |||  |||||||||||||||| |||||||    
T  37460528 aattgtctagaattttaaattctttaaaaattttcaattacctcatccaaatacactct 37460470  T

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Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 45181814 - 45181757
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||||||||| |||| ||| |||||||||||| ||||||||||||||||||||||    
T  45181814 aattgcctagaattctaaactctctaaaattttcaa-ttacctcatccaaacacactct 45181757  T

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Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 35488714 - 35488761
Alignment:
Q  27 aattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||    
T  35488714 aattttaaattctttaaaattttc-aattacatcatccaaacacactct 35488761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 45984823 - 45984883
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||||||||||| |||||||||||||||||    |||||| ||||||||||||||||    
T  45984823 taaattgcctagaattctaaattctttaaaatttctctattaccccatccaaacacactct 45984883  T

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Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 45989183 - 45989243
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||||||||||| |||||||||||||||||    |||||| ||||||||||||||||    
T  45989183 taaattgcctagaattctaaattctttaaaatttctctattaccccatccaaacacactct 45989243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 32651013 - 32651073
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||||||||||| ||| | |||||||||| |||| | ||||||||||||||||| ||||||    
T  32651013 taaattgcctaggattctgaattctttaagatttcccaattacctcatccaaactcactct 32651073  T

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Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 40495691 - 40495750
Alignment:
Q  17 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactcta 76  Q
    |||| |||| |||| ||||||||| |||||||   |||||||||||||||||||||||||    
T  40495691 aattccctataattctaaattcttcaaaatttctcaattacctcatccaaacacactcta 40495750  T

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Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 1580381 - 1580439
Alignment:
Q  18 attgcctagaattttaaattctttaaaattttcaaattacctcatccaa-acacactct 75  Q
    |||||||| |||||||||||||||||||  ||  ||||||||||||||| |||||||||    
T  1580381 attgcctaaaattttaaattctttaaaaaatttcaattacctcatccaacacacactct 1580439  T

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Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 26416413 - 26416469
Alignment:
Q  18 attgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    ||||||||||||| ||||||||| |||||||   ||||||||||| ||||||||||||    
T  26416413 attgcctagaattctaaattcttcaaaatttctcaattacctcat-caaacacactct 26416469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 30080368 - 30080312
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacaca 71  Q
    |||||||| ||||||| ||||||||| |||||||   |||||||||||| |||||||    
T  30080368 taaattgcttagaattctaaattcttcaaaatttctcaattacctcatcaaaacaca 30080312  T

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Target: scaffold0027 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 11305 - 11378
Alignment:
Q  1 caaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 74  Q
    ||||||||||||| ||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||    
T  11305 caaatactttgaggtaaattgcctaaaattttaaattctttacaatttccaaattacctcatccaaacacactc 11378  T

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Target: scaffold0169 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 4508 - 4570
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 77  Q
    |||||||||||||||| ||||||||||||||||| | |||||  |||||||||||||||||||    
T  4508 taaattgcctagaattctaaattctttaaaatttcccaattagttcatccaaacacactctaa 4570  T

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Target: scaffold0417 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 11556 - 11499
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacac 72  Q
    |||||| | ||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  11556 taaattacttagaattctaaattctttaaaattttccaaatacctcatccaaacacac 11499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 7641 - 7688
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaattacctcat 62  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||    
T  7641 taaattgcctagaattctaaattctttaaaatttctcaattacctcat 7688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 19367 - 19326
Alignment:
Q  15 taaattgcctagaattttaaattctttaaaattttcaaatta 56  Q
    ||||||||||| |||| ||||||||||||||||| |||||||    
T  19367 taaattgcctaaaattctaaattctttaaaatttccaaatta 19326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 3358 - 3406
Alignment:
Q  27 aattttaaattctttaaaattttcaaattacctcatccaaacacactct 75  Q
    |||| |||||||||||||||||   |||||||||||||||| |||||||    
T  3358 aattctaaattctttaaaatttctcaattacctcatccaaagacactct 3406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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