View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_17 (Length: 543)
Name: NF15941_low_17
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 10 - 526
Target Start/End: Complemental strand, 54181250 - 54180734
Alignment:
| Q |
10 |
attattcttatttggctagcaatgatagtgaaatcacattcttatttcctaacatgaataatgcaaagcgttttgaagaaatagctactacaccctcaaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54181250 |
attattcttatttggctagcaatgatagtgaaatcacattcttatttcctaacatgaataatgcaaagcgttttgaagaaatagctactacaccctcaaa |
54181151 |
T |
|
| Q |
110 |
tttttcttcccatcttgatgaaactatttgttgtaccactactactaatcaaaacaatgttaccaatattggagccacatatgcacccatagtttcccct |
209 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54181150 |
tttttcttcccattttgatgaaactatttgttgtaccactactactaatcaaaacaatgttaccaatattggagccacatatgcacccatagtttcccct |
54181051 |
T |
|
| Q |
210 |
cctttgattgaagagaatgtcgatgaagtatttacgaagctgtccccaacaattctcgatccttgtttaggccgatatatttacgtttatgatcttccta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54181050 |
cctttgattgaagagaatgtcgatgaagtatttacgaagctgtccccaacaattctcgatccttgtttaggccgatatatttacgtttatgatcttccta |
54180951 |
T |
|
| Q |
310 |
gtaggttcaataaggatttgttgaaaaggtgtcacactctcttgaagtgggaagatttgtgtctttacttatcaaacttaggtttaggacctaagattat |
409 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54180950 |
gtaggttcaataaggatttgttgaaaagatgccacactctcttgaagtgggaagatttgtgtctttacttatcaaacttaggtttaggacctaagattat |
54180851 |
T |
|
| Q |
410 |
tgaggaatcaaaaaagaaggtgctatcaaagaagaattggtatgcaacaaatcaattttcactagaagtaattttccacaacttgatgaaacattacaag |
509 |
Q |
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| T |
54180850 |
tgaggaatcaaaaaagaaggtgctatcaaagaagaattggtatgcaacaaatcaattttcactagaagtaattttccacaacttgatgaaacattacaag |
54180751 |
T |
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| Q |
510 |
tgtttaaccaatgattc |
526 |
Q |
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||||||||||||||||| |
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| T |
54180750 |
tgtttaaccaatgattc |
54180734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 267 - 526
Target Start/End: Original strand, 41947650 - 41947909
Alignment:
| Q |
267 |
gatccttgtttaggccgatatatttacgtttatgatcttcctagtaggttcaataaggatttgttgaaaaggtgtcacactctcttgaagtgggaagatt |
366 |
Q |
| |
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|||||||||||||||| |||||| || ||||||||||||||| ||| |||||| |||||||||||||| | || ||| |||| |||||||||| || |
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| T |
41947650 |
gatccttgtttaggccaatatatctatgtttatgatcttcctgctagattcaatgaggatttgttgaaaggatgccactctctacagaagtgggaaaata |
41947749 |
T |
|
| Q |
367 |
tgtgtctttacttatcaaacttaggtttaggacctaagattattgaggaatcaaaaaagaaggtgctatcaaagaagaattggtatgcaacaaatcaatt |
466 |
Q |
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| T |
41947750 |
tgtgtgttttcttatcaaacttaggtgtaggacctaagattattgagaaatcaaaaaaagaagtgctatcaaagaaaaattggtatgcaacaaatcaata |
41947849 |
T |
|
| Q |
467 |
ttcactagaagtaattttccacaacttgatgaaacattacaagtgtttaaccaatgattc |
526 |
Q |
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|||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
41947850 |
ttcacttgaagtaattttccacaatataatgaaacattacaagtgtttaaccaatgattc |
41947909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 209 - 526
Target Start/End: Original strand, 41942078 - 41942395
Alignment:
| Q |
209 |
tcctttgattgaagagaatgtcgatgaagtatttacgaagctgtccccaacaattctcgatccttgtttaggccgatatatttacgtttatgatcttcct |
308 |
Q |
| |
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|||||||||| || | ||||| ||||||||||||| ||| || | |||| |||| | |||||||||||||| | ||||| || ||||||||||||||| |
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| T |
41942078 |
tcctttgattaaacacaatgttgatgaagtatttaaaaagttgccgccaaaaattatggatccttgtttaggtcagtatatctatgtttatgatcttcct |
41942177 |
T |
|
| Q |
309 |
agtaggttcaataaggatttgttgaaaaggtgtcacactctcttgaagtgggaagatttgtgtctttacttatcaaacttaggtttaggacctaagatta |
408 |
Q |
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||| |||||| |||||||||||||| | || ||| |||| |||||||||| || ||||| ||||| |||||||||||||| ||||||||||||||| |
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| T |
41942178 |
gctagattcaatgaggatttgttgaaaggatgccactctctacagaagtgggaaaatatgtgtgtttacctatcaaacttaggtgtaggacctaagatta |
41942277 |
T |
|
| Q |
409 |
ttgaggaatcaaaaaagaaggtgctatcaaagaagaattggtatgcaacaaatcaattttcactagaagtaattttccacaacttgatgaaacattacaa |
508 |
Q |
| |
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||||| || |||| || || |||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||| |
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| T |
41942278 |
ttgagaaaacaaagaaaaaagtgctatcaaagaagagttggtatgcaacaaatcaattttcccttgaagtaattttccacaacacaatgaaacattacaa |
41942377 |
T |
|
| Q |
509 |
gtgtttaaccaatgattc |
526 |
Q |
| |
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|||||||||||||||||| |
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| T |
41942378 |
gtgtttaaccaatgattc |
41942395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 270 - 526
Target Start/End: Original strand, 22794153 - 22794409
Alignment:
| Q |
270 |
ccttgtttaggccgatatatttacgtttatgatcttcctagtaggttcaataaggatttgttgaaaaggtgtcacactctcttgaagtgggaagatttgt |
369 |
Q |
| |
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||||||||||||| |||||| || || ||||||||||||||| | |||||| | || ||||||||| | || |||| ||| | ||||||||| || ||| |
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| T |
22794153 |
ccttgtttaggccaatatatatatgtctatgatcttcctagtcgattcaatgatgacttgttgaaaggatgcaacacactcattaagtgggaaaatatgt |
22794252 |
T |
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| Q |
370 |
gtctttacttatcaaacttaggtttaggacctaagattattgaggaatcaaaaaagaaggtgctatcaaagaagaattggtatgcaacaaatcaattttc |
469 |
Q |
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||| |||||||||||||||||| ||||| ||||||||||||||||||||||| | | || | |||||||| ||||||||||||||| |||||||||| |
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| T |
22794253 |
gtccttacttatcaaacttaggattagggcctaagattattgaggaatcaaatgaaactgttatttcaaagaaaaattggtatgcaacacatcaattttc |
22794352 |
T |
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| Q |
470 |
actagaagtaattttccacaacttgatgaaacattacaagtgtttaaccaatgattc |
526 |
Q |
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||| ||||||||||| |||||| | |||||| | ||||||||||||||||||||||| |
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| T |
22794353 |
acttgaagtaatttttcacaacataatgaaagactacaagtgtttaaccaatgattc |
22794409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 41947547 - 41947608
Alignment:
| Q |
17 |
ttatttggctagcaatgatagtgaaatcacattcttatttcctaacatgaataatgcaaagc |
78 |
Q |
| |
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|||||||||||||||| |||||| ||| ||||||||| || |||||||||| |||||||||| |
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| T |
41947547 |
ttatttggctagcaataatagtggaatgacattcttactttctaacatgaacaatgcaaagc |
41947608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 267 - 526
Target Start/End: Original strand, 1210404 - 1210663
Alignment:
| Q |
267 |
gatccttgtttaggccgatatatttacgtttatgatcttcctagtaggttcaataaggatttgttgaaaaggtgtcacactctcttgaagtgggaagatt |
366 |
Q |
| |
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|||||||||||| ||| |||||| || |||||||||||||| ||| |||||| ||||||||||||| | || ||| |||| |||||||||| || |
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| T |
1210404 |
gatccttgtttaagccaatatatctatatttatgatcttcctgctagattcaatgtggatttgttgaaaggatgccactctctacagaagtgggaaaata |
1210503 |
T |
|
| Q |
367 |
tgtgtctttacttatcaaacttaggtttaggacctaagattattgaggaatcaaa-aaagaaggtgctatcaaagaagaattggtatgcaacaaatcaat |
465 |
Q |
| |
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||||| ||| ||||||||||||||| |||||| | ||||||||||| ||||||| |||||| || ||||||||||| | |||||||||||||||||||| |
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| T |
1210504 |
tgtgtgttttcttatcaaacttaggcgtaggacttgagattattgagaaatcaaagaaagaa-gttctatcaaagaatagttggtatgcaacaaatcaat |
1210602 |
T |
|
| Q |
466 |
tttcactagaagtaattttccacaacttgatgaaacattacaagtgtttaaccaatgattc |
526 |
Q |
| |
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|||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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|
| T |
1210603 |
attcacttgaagtaattttccacaatataatgaaacattacaagtgtttaaccaatgattc |
1210663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 1210301 - 1210362
Alignment:
| Q |
17 |
ttatttggctagcaatgatagtgaaatcacattcttatttcctaacatgaataatgcaaagc |
78 |
Q |
| |
|
|||||||||||||||| |||||| ||| |||||||| ||||||||||||| |||||||||| |
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|
| T |
1210301 |
ttatttggctagcaataatagtggaatggcattcttacttcctaacatgaacaatgcaaagc |
1210362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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