View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_172 (Length: 254)
Name: NF15941_low_172
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_172 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 29467329 - 29467106
Alignment:
| Q |
20 |
ctagtttgcattattatctctttttaaaactatcatcaatcatattttacttaccaatcaatgttcaaattaccaaagcnnnnnnncctcactgaattag |
119 |
Q |
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| T |
29467329 |
ctagtttgcattattgtctttctttaaaactatcatcaatcatattttacttaccaatcaatgttcaaattaccaaagctttttttcctcactgaattag |
29467230 |
T |
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| Q |
120 |
agattcttcttggttatgtaccaaagaatactgttttatcacttatcaatggaccaacagatacaactgcattaagttattggttgaatttgagattctt |
219 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29467229 |
agattcttcttggttatgtaccaaagaatactgtgttatcacttatcaatggaccaacagatacaactgcattaagttattggttgaattggagattctt |
29467130 |
T |
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| Q |
220 |
cttttgtgcactatggattttcat |
243 |
Q |
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|||||||||||||||||||||||| |
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| T |
29467129 |
cttttgtgcactatggattttcat |
29467106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 29473978 - 29473905
Alignment:
| Q |
174 |
caacagatacaactgcattaagttattggttgaatttgagattcttcttttgtgcactatggattttcatctca |
247 |
Q |
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|||||||||||||||| | |||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
29473978 |
caacagatacaactgcgtcgagttattggttgaactggagattcttcttttgtgcactatggattttcatctca |
29473905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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