View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_177 (Length: 251)
Name: NF15941_low_177
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_177 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 27304145 - 27304382
Alignment:
| Q |
16 |
cttacttcaaatattaatctccatctctaccgattaaaataaata--gatatatgtgtttttgtaaagttagatatttaatttactcttaagattttgat |
113 |
Q |
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| T |
27304145 |
cttacttcaaatattaatctccatctctaccgataaaaaaaaaaattgatatatgtgtttttgtaaagttagatatttaatttactcttaagattttgat |
27304244 |
T |
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| Q |
114 |
cattggtaaaactctccttgcacaatcaatgttaaacatttgaagttgagttggccatatattatctataaacaggcaccatattactcatccattcacc |
213 |
Q |
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| T |
27304245 |
cattggtaaaactctccttgcacaatcaatgttaaacatttgaagttgagttggccatatattatctataaacaggcaccatattactcatccattcact |
27304344 |
T |
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| Q |
214 |
aatccaaactcactaacacacttgaattgcatttcctc |
251 |
Q |
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| T |
27304345 |
aatccacactcactaacacacttgaattgcatttcctc |
27304382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 27301296 - 27301522
Alignment:
| Q |
16 |
cttacttcaaatattaatctccatctctaccgattaaaataaatagatatatgtgtttttgtaaagttagatatttaatttactcttaagattttgatca |
115 |
Q |
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| T |
27301296 |
cttacttcaaatattaatctccatctctaccgataaaaataaataaatacatgagtttttgtaaagttagatattta-------ctcgagattttgatca |
27301388 |
T |
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| Q |
116 |
ttggtaaaactctccttgcacaatcaatgttaaacatttgaagttgagttggccatatattatctataaacaggcaccatattactcatccattcaccaa |
215 |
Q |
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| T |
27301389 |
ttggtaaaactct--ttgcacaatcaattttaaacatttgaagttgagttggccatatatcatctataaataggcaccatataactcatccattcaccaa |
27301486 |
T |
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| Q |
216 |
tccaaactcactaacacacttgaattgcatttcctc |
251 |
Q |
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| T |
27301487 |
tccaaactcactaacacacttgaatagcatttcctc |
27301522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 14890051 - 14890009
Alignment:
| Q |
207 |
attcaccaatccaaactcactaacacacttgaattgcatttcc |
249 |
Q |
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| T |
14890051 |
attcaccaatctacactcactaacacactagaattgcatttcc |
14890009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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