View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_180 (Length: 250)

Name: NF15941_low_180
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_180
NF15941_low_180
[»] chr3 (6 HSPs)
chr3 (18-244)||(14853423-14853651)
chr3 (32-244)||(26535569-26535783)
chr3 (97-204)||(25783096-25783205)
chr3 (151-202)||(3168556-3168609)
chr3 (97-199)||(32072481-32072586)
chr3 (92-138)||(8440922-8440968)
[»] chr7 (6 HSPs)
chr7 (18-244)||(15644729-15644958)
chr7 (32-177)||(17507360-17507505)
chr7 (32-177)||(17545709-17545854)
chr7 (87-198)||(551998-552111)
chr7 (92-141)||(6344144-6344193)
chr7 (88-193)||(45977004-45977111)
[»] chr5 (3 HSPs)
chr5 (33-244)||(32239304-32239519)
chr5 (115-198)||(17673698-17673782)
chr5 (97-178)||(28449227-28449308)
[»] chr6 (7 HSPs)
chr6 (66-244)||(13649409-13649590)
chr6 (18-244)||(18587865-18588094)
chr6 (81-239)||(3550660-3550820)
chr6 (81-198)||(20013764-20013881)
chr6 (100-202)||(7082526-7082631)
chr6 (100-179)||(8809763-8809842)
chr6 (92-198)||(28633698-28633806)
[»] chr8 (8 HSPs)
chr8 (69-244)||(37322124-37322302)
chr8 (32-241)||(136445-136656)
chr8 (32-241)||(18309320-18309531)
chr8 (77-244)||(25890634-25890803)
chr8 (99-244)||(17971635-17971782)
chr8 (97-204)||(9445317-9445426)
chr8 (81-198)||(37718423-37718542)
chr8 (97-199)||(42648820-42648924)
[»] chr2 (5 HSPs)
chr2 (32-244)||(13059451-13059665)
chr2 (85-204)||(36552228-36552349)
chr2 (97-239)||(37532681-37532825)
chr2 (66-244)||(44029606-44029788)
chr2 (92-198)||(36930772-36930880)
[»] chr1 (7 HSPs)
chr1 (32-244)||(39584545-39584759)
chr1 (79-239)||(9990630-9990792)
chr1 (89-198)||(30713324-30713435)
chr1 (99-198)||(25388384-25388485)
chr1 (102-202)||(40704053-40704156)
chr1 (97-204)||(27800837-27800946)
chr1 (92-198)||(28381550-28381658)
[»] chr4 (4 HSPs)
chr4 (69-198)||(47129220-47129353)
chr4 (92-204)||(43128019-43128133)
chr4 (124-210)||(7098106-7098194)
chr4 (92-198)||(54684197-54684305)
[»] scaffold0024 (1 HSPs)
scaffold0024 (79-239)||(87605-87767)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 14853423 - 14853651
Alignment:
Q  18 agtgatatcattaacacaaggtgtgtcaagaaaccaccgcaaacaacggttcacaaaagatacaaagagtctatccaacgcctaaacacgacataggact 117  Q
    ||||||||| | | || |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  14853423 agtgatatcgtcagcaaaaggtgtgccaagaaaccaccgcaaacaaaggttcacaaaagatacaaagagtctatccaacgcttaaacacgacgtaggact 14853522  T
Q  118 agaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttactttgtctagtagcttatctaaagat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| ||||||||||    
T  14853523 agaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaaagaataatactttactttgtctagtagctgatctaaagat 14853622  T
Q  216 gactccttttgattaaataatctagcatt 244  Q
    |||||||||||||||||||||||||||||    
T  14853623 gactccttttgattaaataatctagcatt 14853651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 32 - 244
Target Start/End: Original strand, 26535569 - 26535783
Alignment:
Q  32 cacaaggtgtgtcaagaaaccaccgcaaacaacggttcacaaaagatacaaagagtctatccaacgcctaaacacgacataggactagaccaccacatat 131  Q
    ||||||||||| ||||  ||||||||| ||||| |||||||| | |||||||||||||||| || ||||||||||||||||||||||||| |||||||||    
T  26535569 cacaaggtgtgccaagttaccaccgcacacaacagttcacaacaaatacaaagagtctatcaaatgcctaaacacgacataggactagactaccacatat 26535668  T
Q  132 gatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttactttgtctagtagcttatctaaagatgactccttttgatt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||| ||||| |||||||||| | || ||||| ||    
T  26535669 gatcaccaaatacaaaacaagcctttttggctttcaaccaccacaaagaataatactttactttgtctaatagctgatctaaagataattctttttgctt 26535768  T
Q  230 aaataatctagcatt 244  Q
    ||| |||||||||||    
T  26535769 aaacaatctagcatt 26535783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 25783096 - 25783205
Alignment:
Q  97 gcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttactttg 194  Q
    ||||||||| ||||  ||||| | |||||||| |||||||||||||||||||  ||| ||||| || |||| |||||||||  |||||||||| ||||||    
T  25783096 gcctaaacatgacaatggactcgtccaccacaaatgatcaccaaatacaaaagtagcttttttagccttcagccaccacaatgaataatatttaactttg 25783195  T
Q  195 tctagtagct 204  Q
    ||||| ||||    
T  25783196 tctagcagct 25783205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 3168556 - 3168609
Alignment:
Q  151 agcctttttggctttcaaccaccacaaa--ataatattttactttgtctagtag 202  Q
    |||||| |||||||||||||||||||||  ||||||||||||||||||||||||    
T  3168556 agccttattggctttcaaccaccacaaagaataatattttactttgtctagtag 3168609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 32072586 - 32072481
Alignment:
Q  97 gcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaag-cctttttggctttcaaccaccacaa--aataatattttacttt 193  Q
    |||||||||||||| ||| || | | |||||| |||||||||||||||||||  || ||||||| ||||||| |||||| ||  ||||| | ||||||||    
T  32072586 gcctaaacacgacaaagggcttgtctaccacaaatgatcaccaaatacaaaagtagccctttttagctttcagccaccagaaggaataaaactttacttt 32072487  T
Q  194 gtctag 199  Q
    ||||||    
T  32072486 gtctag 32072481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 8440968 - 8440922
Alignment:
Q  92 ccaacgcctaaacacgacataggactagaccaccacatatgatcacc 138  Q
    |||| |||||||||||||||||| || |||||||||| |||||||||    
T  8440968 ccaatgcctaaacacgacatagggctcgaccaccacaaatgatcacc 8440922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 15644729 - 15644958
Alignment:
Q  18 agtgatatcattaacacaaggtgtgtcaagaaaccaccgcaaacaacggttcacaaaagatacaaagagtctatccaacgcctaaacacgacataggact 117  Q
    ||||||||| ||| ||||||||||| ||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15644729 agtgatatcgttagcacaaggtgtgccaagaaaccaccgaaaacaatggttcataaaagatacaaagagtctatccaacgcctaaacacgacataggact 15644828  T
Q  118 agaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataata-ttttactttgtctagtagcttatctaaaga 214  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||  ||||||| |||||||||||||||||||| |||||||||    
T  15644829 agaccaccacatatgatcatcaaatacaaaacaagcatttttgggtttcaaccaccacaaagaataatacttttactttgtctagtagctgatctaaaga 15644928  T
Q  215 tgactccttttgattaaataatctagcatt 244  Q
    ||||||||||||||||||||||||||||||    
T  15644929 tgactccttttgattaaataatctagcatt 15644958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 17507505 - 17507360
Alignment:
Q  32 cacaaggtgtgtcaagaaaccaccgcaaacaacggttcacaaaagatacaaagagtctatccaacgcctaaacacgacataggactagaccaccacatat 131  Q
    ||||||||||| ||||| ||||||||| ||| | ||| |||| | |||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  17507505 cacaaggtgtgccaagataccaccgcacacaccagtttacaacaaatacaaagggtctatccaatgcctaaacacgacataggactagaccaccacatat 17507406  T
Q  132 gatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa 177  Q
    | |||||||| | |||||||||||||||||||||||||||||||||    
T  17507405 ggtcaccaaaaataaaacaagcctttttggctttcaaccaccacaa 17507360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 17545709 - 17545854
Alignment:
Q  32 cacaaggtgtgtcaagaaaccaccgcaaacaacggttcacaaaagatacaaagagtctatccaacgcctaaacacgacataggactagaccaccacatat 131  Q
    ||||||||||| ||||| ||||||||| ||| | ||| |||| | |||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  17545709 cacaaggtgtgccaagataccaccgcacacaccagtttacaacaaatacaaagggtctatccaatgcctaaacacgacataggactagaccaccacatat 17545808  T
Q  132 gatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa 177  Q
    | |||||||| | |||||||||||||||||||||||||||||||||    
T  17545809 ggtcaccaaaaataaaacaagcctttttggctttcaaccaccacaa 17545854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 552111 - 551998
Alignment:
Q  87 tctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataata 184  Q
    |||||| || ||||||||||||||||||||||||||||||||| || |||||||| ||||||  |||||| ||| ||||||||| ||||||  | | |||    
T  552111 tctatctaatgcctaaacacgacataggactagaccaccacatgtgttcaccaaaaacaaaagtagccttcttgactttcaaccgccacaacgagtgata 552012  T
Q  185 ttttactttgtcta 198  Q
    ||||||||||||||    
T  552011 ttttactttgtcta 551998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 6344193 - 6344144
Alignment:
Q  92 ccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaa 141  Q
    |||| |||||||||||||||||| || |||||||||| ||||||||||||    
T  6344193 ccaatgcctaaacacgacatagggctcgaccaccacaaatgatcaccaaa 6344144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 45977111 - 45977004
Alignment:
Q  88 ctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccac--aaaataatat 185  Q
    |||| ||| |||||||||||| | | || | |||||||| |  || ||||||||||||||   |||||||||| ||||||||||||||  |||||||||     
T  45977111 ctatacaatgcctaaacacgataaaagattcgaccaccaaaagtgttcaccaaatacaaagatagcctttttgactttcaaccaccacaaaaaataatac 45977012  T
Q  186 tttacttt 193  Q
    ||||||||    
T  45977011 tttacttt 45977004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 33 - 244
Target Start/End: Original strand, 32239304 - 32239519
Alignment:
Q  33 acaaggtgtgtcaagaaaccaccgcaaacaa-cggttcacaaaagatacaa-agagtctatccaacgcctaaacacgacataggactagaccaccacata 130  Q
    |||||||||| ||||||||||||| ||| |  | ||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32239304 acaaggtgtgccaagaaaccaccgaaaaaattcagttcacataagatataatagagtctatccaacgcctaaacacgacataggactagaccaccacata 32239403  T
Q  131 tgatcaccaaatacaaaacaagcctttttggctttcaaccaccac--aaaataatattttactttgtctagtagcttatctaaagatgactccttttgat 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||| ||||| |||| |||| ||||| |    
T  32239404 tgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaaaaaataatactttactttgtctagtagctgatctatagataactctttttgtt 32239503  T
Q  229 taaataatctagcatt 244  Q
    ||||||||||||||||    
T  32239504 taaataatctagcatt 32239519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 17673698 - 17673782
Alignment:
Q  115 actagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttactttgtcta 198  Q
    ||||||||||||||| || |||||||| |||||  | |||||||||| |||||||||||||||  | | |||||||||||||||||    
T  17673698 actagaccaccacatgtgttcaccaaaaacaaagta-gcctttttggttttcaaccaccacaaagagttatattttactttgtcta 17673782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 28449308 - 28449227
Alignment:
Q  97 gcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaaa 178  Q
    ||||||||||||||  || || |||||||||| ||  ||||||||||||||   || |||||||||||||||||| ||||||    
T  28449308 gcctaaacacgacaatgggctcgaccaccacaaatattcaccaaatacaaagatagtctttttggctttcaaccatcacaaa 28449227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 66 - 244
Target Start/End: Complemental strand, 13649590 - 13649409
Alignment:
Q  66 gttcacaaaagatacaa-agagtctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctt 164  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  13649590 gttcacaaaagatacaatagagtctatccaacgcctaaacacgacataggactcgaccaccacatatgatcaccaaatgcaaaacaagcctttttggctt 13649491  T
Q  165 tcaaccaccacaa--aataatattttactttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatt 244  Q
    |||||||||||||  ||||||||||||||||||||||||||| ||||| ||||| ||| ||||| ||||||||| |||||||    
T  13649490 tcaaccaccacaaagaataatattttactttgtctagtagctgatctatagatggctctttttgtttaaataatttagcatt 13649409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 18587865 - 18588094
Alignment:
Q  18 agtgatatcattaacacaaggtgtgtcaagaaaccaccgcaaacaa-cggttcacaaaagatacaa-agagtctatccaacgcctaaacacgacatagga 115  Q
    |||||| || ||| ||||||||||||||||||||||||| ||| |  | ||||||| || |||||| |||||||| ||||||||||||||||||||||||    
T  18587865 agtgatctccttagcacaaggtgtgtcaagaaaccaccgaaaaaaggcagttcacacaaaatacaagagagtctagccaacgcctaaacacgacatagga 18587964  T
Q  116 ctagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttactttgtctagtagcttatctaaag 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||| ||||||||||||||||| || |  | ||    
T  18587965 ctagaccaccacatatgatcaccaaatacaaaacaagcctttttggatttcaaccaccacaaagaataatactttactttgtctagtag-ttgttcatag 18588063  T
Q  214 atgactccttttgattaaataatctagcatt 244  Q
    ||||||| ||||| |||||||||||||||||    
T  18588064 atgactctttttgtttaaataatctagcatt 18588094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 239
Target Start/End: Original strand, 3550660 - 3550820
Alignment:
Q  81 aaagagtctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--a 178  Q
    |||| |||||| ||| | |||||||||||| | |||| |||||||||| ||| |||||||||||||| | |||||||||||||||||||||||||||  |    
T  3550660 aaagtgtctattcaatgtctaaacacgacaaaagactcgaccaccacaaatgttcaccaaatacaaagctagcctttttggctttcaaccaccacaaaga 3550759  T
Q  179 ataatattttactttgtctagtagcttatctaaagatgactccttttgattaaataatcta 239  Q
    |||||||||||||||||||||||| | ||||| |||  | || || || ||||||||||||    
T  3550760 ataatattttactttgtctagtagttgatctatagagtattctttctgtttaaataatcta 3550820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 81 - 198
Target Start/End: Complemental strand, 20013881 - 20013764
Alignment:
Q  81 aaagagtctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--a 178  Q
    ||||| ||||||||| |||||||||||||| |||| ||||||||||||| || |||||||| ||||||  |||||||||||||||||||||||||||  |    
T  20013881 aaagaatctatccaatgcctaaacacgacagaggattagaccaccacatgtg-tcaccaaaaacaaaa-gagcctttttggctttcaaccaccacaacga 20013784  T
Q  179 ataatattttactttgtcta 198  Q
     | |||||||||||||||||    
T  20013783 gtgatattttactttgtcta 20013764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 7082526 - 7082631
Alignment:
Q  100 taaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccac---aaaataatattttactttgtc 196  Q
    ||||||||||| || ||| |||||||||| ||| |||||||||||||| |   ||||||| |||||||||||||||   ||||||||| |||||||||||    
T  7082526 taaacacgacaaagtactcgaccaccacaaatgttcaccaaatacaaagctttccttttttgctttcaaccaccacaaaaaaataatactttactttgtc 7082625  T
Q  197 tagtag 202  Q
    ||||||    
T  7082626 tagtag 7082631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 8809842 - 8809763
Alignment:
Q  100 taaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaaaa 179  Q
    |||||| |||| |||||| |||||||||| ||| |||||||||||||| |   ||||||| |||||||||||||||||||    
T  8809842 taaacatgacaaaggactcgaccaccacaaatgttcaccaaatacaaagctttccttttttgctttcaaccaccacaaaa 8809763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 198
Target Start/End: Complemental strand, 28633806 - 28633698
Alignment:
Q  92 ccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatatttta 189  Q
    |||| ||||||||||||||  |||||  |||||||||| ||||||||||| | ||||  |  | |||||||||||| |||||||||  ||||||| ||||    
T  28633806 ccaatgcctaaacacgacaatggactcaaccaccacatgtgatcaccaaacataaaaacacaccttttggctttcatccaccacaatgaataatacttta 28633707  T
Q  190 ctttgtcta 198  Q
    |||| ||||    
T  28633706 ctttatcta 28633698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 69 - 244
Target Start/End: Original strand, 37322124 - 37322302
Alignment:
Q  69 cacaaaagatacaa-agagtctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttca 167  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37322124 cacaaaagatataatagagtctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttgactttca 37322223  T
Q  168 accaccacaa--aataatattttactttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatt 244  Q
    ||||||||||  ||||||||||||||||||||||||| | ||||| ||||||||| |||||  ||||||||||||||||    
T  37322224 accaccacaaagaataatattttactttgtctagtagttgatctatagatgactctttttgtataaataatctagcatt 37322302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 32 - 241
Target Start/End: Original strand, 136445 - 136656
Alignment:
Q  32 cacaaggtgtgtcaagaaaccaccgcaaacaacggttcacaaaagatacaaagagtctatccaacgcctaaacacgacataggactagaccaccacatat 131  Q
    ||||||||||| ||||| ||||||||| ||| | ||| |||| | |||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  136445 cacaaggtgtgccaagataccaccgcacacaccagtttacaacaaatacaaagtgtctatccaatgcctaaacacgacataggactagaccaccacatat 136544  T
Q  132 gatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttactttgtctagtagcttatctaaagatgactccttttgatt 229  Q
    | |||||||| |||||||||||||||||||||||||||||||||||  ||||| | |||||||| |||| || || |||||||||||| |||||||| ||    
T  136545 ggtcaccaaaaacaaaacaagcctttttggctttcaaccaccacaaggaataaaactttactttatctaataactgatctaaagatgattccttttgctt 136644  T
Q  230 aaataatctagc 241  Q
    ||| ||||||||    
T  136645 aaacaatctagc 136656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 32 - 241
Target Start/End: Complemental strand, 18309531 - 18309320
Alignment:
Q  32 cacaaggtgtgtcaagaaaccaccgcaaacaacggttcacaaaagatacaaagagtctatccaacgcctaaacacgacataggactagaccaccacatat 131  Q
    ||||||||||| ||||| ||||||||| ||| | ||| |||| | ||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  18309531 cacaaggtgtgccaagataccaccgcacacaccagtttacaataaatacaaaggatctatccaatgcctaaacacgacataggactagaccaccacatat 18309432  T
Q  132 gatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttactttgtctagtagcttatctaaagatgactccttttgatt 229  Q
    | |||||||| |||||||||||||||||||||||||||||||||||  ||||| | |||||||| |||| || || |||||||||||| |||||||| ||    
T  18309431 ggtcaccaaaaacaaaacaagcctttttggctttcaaccaccacaaggaataaaactttactttatctaataactgatctaaagatgattccttttgctt 18309332  T
Q  230 aaataatctagc 241  Q
    ||| ||||||||    
T  18309331 aaacaatctagc 18309320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 77 - 244
Target Start/End: Original strand, 25890634 - 25890803
Alignment:
Q  77 atacaaagagtctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccaca 176  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25890634 atacaaagggtctatccaatgcctaaacacgacataggactggaccaccacatatgatcaccaaaaacaaaacaagcctttttggctttcaaccaccaca 25890733  T
Q  177 a--aataatattttactttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatt 244  Q
    |  ||||| | |||||||| |||| || || |||||||||||| |||||||| ||||| |||||||||||    
T  25890734 aagaataaaactttactttatctaataactgatctaaagatgattccttttgcttaaacaatctagcatt 25890803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 244
Target Start/End: Complemental strand, 17971782 - 17971635
Alignment:
Q  99 ctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttactttgtc 196  Q
    ||||||| |||| |||||||||||||||||| || |||||| | ||||||  |||||||||| |||||| |||||||||  |||  ||||||||||||||    
T  17971782 ctaaacatgacaaaggactagaccaccacatgtgttcaccataaacaaaaatagcctttttgactttcagccaccacaaataatggtattttactttgtc 17971683  T
Q  197 tagtagcttatctaaagatgactccttttgattaaataatctagcatt 244  Q
    || ||||  | ||| |||| | || || || |||||||||||||||||    
T  17971682 taatagcagaactagagatcattctttctgtttaaataatctagcatt 17971635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 9445426 - 9445317
Alignment:
Q  97 gcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaa-acaagcctttttggctttcaaccaccacaaaa--taatattttacttt 193  Q
    ||||||||||||||  ||||| ||||||||||  || |||| ||| ||||| |||| | || ||||||||||||||||||||||  ||||||||||||||    
T  9445426 gcctaaacacgacaatggactcgaccaccacaattgttcacaaaaaacaaagacaatc-ttattggctttcaaccaccacaaaaaataatattttacttt 9445328  T
Q  194 gtctagtagct 204  Q
    |||||||||||    
T  9445327 gtctagtagct 9445317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 198
Target Start/End: Original strand, 37718423 - 37718542
Alignment:
Q  81 aaagagtctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--a 178  Q
    ||||| |||||| ||  ||||||||||||| ||||||||||||||| || || |||||||| | ||||  || ||||||| ||||||||||||| ||  |    
T  37718423 aaagaatctatctaatacctaaacacgacagaggactagaccaccatatgtgttcaccaaaaataaaaatagtctttttgactttcaaccaccataatga 37718522  T
Q  179 ataatattttactttgtcta 198  Q
     | |||||||||||||||||    
T  37718523 gtgatattttactttgtcta 37718542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 42648820 - 42648924
Alignment:
Q  97 gcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttactttg 194  Q
    |||||||||||||| | | ||  ||||||||| ||| |||||||| ||||||  || ||| ||||| |||| |||||||||  |||||||||||||||||    
T  42648820 gcctaaacacgacaaatggctcaaccaccacaaatggtcaccaaaaacaaaaacagtcttattggccttcagccaccacaaagaataatattttactttg 42648919  T
Q  195 tctag 199  Q
    |||||    
T  42648920 tctag 42648924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 32 - 244
Target Start/End: Original strand, 13059451 - 13059665
Alignment:
Q  32 cacaaggtgtgtcaagaaaccaccgcaaacaacggttcacaaaagatacaaagagtctatccaacgcctaaacacgacataggactagaccaccacatat 131  Q
    |||||| |||| |||||  |||||||| ||| | ||| |||| | |||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  13059451 cacaagatgtgccaagatgccaccgcacacaccagtttacaacaaatacaaagggtctatccaatgcctaaacacgacataggactagaccaccacatat 13059550  T
Q  132 gatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttactttgtctagtagcttatctaaagatgactccttttgatt 229  Q
    | |||||||| |||||||||||||||||||||||||||||||||||  ||||| | |||||||| |||| || || ||||| |||||| |||||||| ||    
T  13059551 ggtcaccaaaaacaaaacaagcctttttggctttcaaccaccacaaggaataaaactttactttatctaataactgatctagagatgattccttttgctt 13059650  T
Q  230 aaataatctagcatt 244  Q
    ||| |||||||||||    
T  13059651 aaacaatctagcatt 13059665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 85 - 204
Target Start/End: Original strand, 36552228 - 36552349
Alignment:
Q  85 agtctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataa 182  Q
    ||||||||||| | |||||||||||| |||||| |||||||||||||| |  ||||||||||||| || |||||||||||||||||| |||||  |||||    
T  36552228 agtctatccaatgtctaaacacgacagaggactcgaccaccacatatgttttccaaatacaaaactagtctttttggctttcaaccatcacaaagaataa 36552327  T
Q  183 tattttactttgtctagtagct 204  Q
    ||||||||||||| ||||||||    
T  36552328 tattttactttgtttagtagct 36552349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 37532825 - 37532681
Alignment:
Q  97 gcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttactttg 194  Q
    ||||| ||||||||  | ||| |||||||||| ||| ||||||||||||||   || |||||||| |||||||||||||||  ||||||||||||||||     
T  37532825 gcctagacacgacaatgaactcgaccaccacaaatgttcaccaaatacaaagatagtctttttggttttcaaccaccacaaagaataatattttactttt 37532726  T
Q  195 tctagtagcttatctaaagatgactccttttgattaaataatcta 239  Q
    | |||||| | ||||| |||  | || ||||| ||||||||||||    
T  37532725 tgtagtagttgatctatagaacattctttttgtttaaataatcta 37532681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 66 - 244
Target Start/End: Complemental strand, 44029788 - 44029606
Alignment:
Q  66 gttcacaaaagatacaaagag--tctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggct 163  Q
    |||||||||| ||| ||||||  ||||||||| ||||||| |||||| |  ||||||||||||||| || |||| ||| |||||   | |||||||||||    
T  44029788 gttcacaaaacatataaagagaatctatccaatgcctaaatacgacaaattactagaccaccacatgtgttcactaaaaacaaacataacctttttggct 44029689  T
Q  164 ttcaaccaccacaaa--ataatattttactttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatt 244  Q
    |||| |||||| |||  ||  |||||||||||||||| ||||| ||||| ||   | || || || |||||||||||||||||    
T  44029688 ttcagccaccataaaggatggtattttactttgtctaatagctgatctagagtgcattctttctgtttaaataatctagcatt 44029606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 36930772 - 36930880
Alignment:
Q  92 ccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatatttta 189  Q
    |||| |||||||||||||||||| || |||||||||| ||||||||||||   ||||  | |||| |  |||||||||||||||||  |||| |||||||    
T  36930772 ccaatgcctaaacacgacatagggctcgaccaccacaaatgatcaccaaacgtaaaaacaaccttatgtgctttcaaccaccacaatgaatagtatttta 36930871  T
Q  190 ctttgtcta 198  Q
    |||| ||||    
T  36930872 ctttatcta 36930880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 32 - 244
Target Start/End: Original strand, 39584545 - 39584759
Alignment:
Q  32 cacaaggtgtgtcaagaaaccaccgcaaacaacggttcacaaaagatacaaagagtctatccaacgcctaaacacgacataggactagaccaccacatat 131  Q
    |||||| |||| ||||| ||||||||| ||| | ||| |||| | |  ||||| |||||||||| |||||||||||||||||||||||||||||||| ||    
T  39584545 cacaagatgtgccaagataccaccgcacacaccagtttacaacaaaagcaaagggtctatccaatgcctaaacacgacataggactagaccaccacaaat 39584644  T
Q  132 gatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttactttgtctagtagcttatctaaagatgactccttttgatt 229  Q
    |||||||||| | |||||||||||||||||||||||||||||||||  ||||| | || ||||| |||| || || ||||| |||||| |||||||| ||    
T  39584645 gatcaccaaaaataaaacaagcctttttggctttcaaccaccacaaagaataaaacttaactttatctaataactgatctagagatgattccttttgctt 39584744  T
Q  230 aaataatctagcatt 244  Q
    ||| | |||||||||    
T  39584745 aaacagtctagcatt 39584759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 239
Target Start/End: Original strand, 9990630 - 9990792
Alignment:
Q  79 acaaagagtctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccac--a 176  Q
    ||||| ||||||  ||| ||||||||||||||  ||||| || |||||||  || |||||||| |||||   |||||| || |||||||||||||||  |    
T  9990630 acaaatagtctacacaatgcctaaacacgacaatggactcgatcaccacaattgttcaccaaaaacaaagatagccttatttgctttcaaccaccacaga 9990729  T
Q  177 aaataatattttactttgtctagtagcttatctaaagatgactccttttgattaaataatcta 239  Q
     ||||||||||||||||||||||||||| | |||  ||  | ||||| |||||||||||||||    
T  9990730 gaataatattttactttgtctagtagctgaactattgagcattccttctgattaaataatcta 9990792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 30713435 - 30713324
Alignment:
Q  89 tatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatatt 186  Q
    ||||||| |||||||||||||||  |||| ||||||||||  ||||||||||| | ||||  | |||| | ||||||||||||||| ||  |||||||||    
T  30713435 tatccaatgcctaaacacgacatgagactcgaccaccacaattgatcaccaaacataaaaacaaccttatgggctttcaaccaccataatgaataatatt 30713336  T
Q  187 ttactttgtcta 198  Q
    ||||||| ||||    
T  30713335 ttactttatcta 30713324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 25388384 - 25388485
Alignment:
Q  99 ctaaacacgacataggactagaccaccacatatgatcaccaaatacaaa-acaagcctttttggctttcaaccaccacaa--aataatattttactttgt 195  Q
    |||||||||||| |||||| |||||||||| ||  |||||||||||||| |||| |||||||  ||||||||||||| ||  |||||||||||||||| |    
T  25388384 ctaaacacgacaaaggactcgaccaccacaaatattcaccaaatacaaagacaa-cctttttaactttcaaccaccataaagaataatattttactttat 25388482  T
Q  196 cta 198  Q
    |||    
T  25388483 cta 25388485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 40704053 - 40704156
Alignment:
Q  102 aacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataata-ttttactttgtcta 198  Q
    |||||||||  ||||| ||||| |||| ||| |||||||  |||||   |||||| ||| ||||||||||||||||  ||||||| ||||||||||||||    
T  40704053 aacacgacaatggactcgaccatcacaaatgttcaccaataacaaagatagccttattgactttcaaccaccacaaagaataatatttttactttgtcta 40704152  T
Q  199 gtag 202  Q
    ||||    
T  40704153 gtag 40704156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 27800837 - 27800946
Alignment:
Q  97 gcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaa-acaagcctttttggctttcaaccaccacaa--aataatattttacttt 193  Q
    ||||||| | |||| |||||| |||||||||| ||| |||||||| | ||| ||| |  || ||||||||||||||||||||  ||||||| |||| |||    
T  27800837 gcctaaataggacaaaggactcgaccaccacaaatgctcaccaaaaagaaatacacgt-ttattggctttcaaccaccacaaagaataatactttatttt 27800935  T
Q  194 gtctagtagct 204  Q
    |||||||||||    
T  27800936 gtctagtagct 27800946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 28381550 - 28381658
Alignment:
Q  92 ccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaa-acaagcctttttggctttcaaccaccacaa--aataatatttt 188  Q
    |||| ||||||||||||||  ||| | ||| ||||||| ||||||||||| | ||| |||| || |||||||||||| |||||||||  ||| |||||||    
T  28381550 ccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaatacaa-cccttttggctttcatccaccacaatgaatgatatttt 28381648  T
Q  189 actttgtcta 198  Q
    ||||| ||||    
T  28381649 actttatcta 28381658  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 69 - 198
Target Start/End: Original strand, 47129220 - 47129353
Alignment:
Q  69 cacaaaagatacaaagag--tctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttc 166  Q
    ||||||| ||||||||||  | ||||||| || |||||||||||||||||||||||||||||| || |||||||| ||||||  ||||||||||||||||    
T  47129220 cacaaaatatacaaagagaatttatccaatgcttaaacacgacataggactagaccaccacatgtgttcaccaaaaacaaaaatagcctttttggctttc 47129319  T
Q  167 aaccaccacaa--aataatattttactttgtcta 198  Q
    |||||||||||  | | |||||||||||||||||    
T  47129320 aaccaccacaaagagtgatattttactttgtcta 47129353  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 43128133 - 43128019
Alignment:
Q  92 ccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatatttta 189  Q
    |||| ||||||| ||||||   |||| ||||||| || ||| ||||||||||||||   | |||||||||||||||||||||||||  ||||||||||||    
T  43128133 ccaatgcctaaatacgacaatagactcgaccaccgcagatgttcaccaaatacaaagacatcctttttggctttcaaccaccacaaagaataatatttta 43128034  T
Q  190 ctttgtctagtagct 204  Q
    |||||||||||||||    
T  43128033 ctttgtctagtagct 43128019  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 7098106 - 7098194
Alignment:
Q  124 ccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttactttgtctagtagcttatcta 210  Q
    ||||| ||| ||||||||||||||   ||||||||||||||| | |||||| ||  |||||||||| |||| ||||| ||||| |||||    
T  7098106 ccacaaatgttcaccaaatacaaagagagcctttttggcttttatccaccataaagaataatatttgacttagtctaatagctgatcta 7098194  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 54684197 - 54684305
Alignment:
Q  92 ccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatatttta 189  Q
    |||| ||||||| ||||||| ||||| |||||||| |  ||||||||||| | ||||  | |||| | |||||||| |||||| ||  ||||||||||||    
T  54684197 ccaatgcctaaatacgacatgggactcgaccaccataattgatcaccaaacataaaaacaaccttatgggctttcatccaccataatgaataatatttta 54684296  T
Q  190 ctttgtcta 198  Q
    |||| ||||    
T  54684297 ctttatcta 54684305  T

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Target: scaffold0024 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 239
Target Start/End: Complemental strand, 87767 - 87605
Alignment:
Q  79 acaaagagtctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaa-acaagcctttttggctttcaaccaccacaa 177  Q
    ||||| ||||||  ||| ||||||||||||||  ||||| ||||||||||  || |||| ||| ||||| |||| |||| ||||||||||||||||||||    
T  87767 acaaatagtctagtcaatgcctaaacacgacaatggactcgaccaccacaattgttcactaaaaacaaagacaa-ccttattggctttcaaccaccacaa 87669  T
Q  178 --aataatattttactttgtctagtagcttatctaaagatgactccttttgattaaataatcta 239  Q
      ||||||||||||||||||| ||||| | | |||   |  | |||||||||||||||||||||    
T  87668 agaataatattttactttgtccagtagttgaactattaagcattccttttgattaaataatcta 87605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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