View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_181 (Length: 249)
Name: NF15941_low_181
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_181 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 26790698 - 26790938
Alignment:
| Q |
1 |
ctccataacaatttttctgaaaagatttgctggcccacatgaccatcgatgttgttggtacctataggcctttaaagtacttggtaattcgtttttaacc |
100 |
Q |
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| T |
26790698 |
ctccataacaatttttctgaaaagatttgctggcccacatgaccatcgatgttgttggtacctataggcctttaaagtacttggtaattcgtttttaacc |
26790797 |
T |
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| Q |
101 |
tataccaagaacaccatatattaaaataaaaccaatgtaacatcatattttggtaacataacaacaagtaaagagtttagaaattggattaagaaaatgg |
200 |
Q |
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| T |
26790798 |
tataccaagaacaccatatattaaaataaaaccaatgtaacatcatattttggtaacataacaacaagtaaagagtttagaaattggattaagaaaatgg |
26790897 |
T |
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| Q |
201 |
aacctgtaaattggagagatataggaatttccatcctttga |
241 |
Q |
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| T |
26790898 |
aacctgtaaattggagagatataggaatttccatcctttga |
26790938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 26831049 - 26831152
Alignment:
| Q |
1 |
ctccataacaatttttctgaaaagatttgctggcccacatgaccatcgatgttgttggtacctataggcctttaaagtacttggtaattcgtttttaacc |
100 |
Q |
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|||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||| |
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| T |
26831049 |
ctccattaccatttttctgaaaagattggctggtccacatgaccatcgatgttgttggtacctaaaggcttttaatgtacttggcaattcgtttttaacc |
26831148 |
T |
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| Q |
101 |
tata |
104 |
Q |
| |
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|||| |
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| T |
26831149 |
tata |
26831152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 26817404 - 26817507
Alignment:
| Q |
1 |
ctccataacaatttttctgaaaagatttgctggcccacatgaccatcgatgttgttggtacctataggcctttaaagtacttggtaattcgtttttaacc |
100 |
Q |
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||||||| | |||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||| ||||||||| |
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| T |
26817404 |
ctccatagccatttttctaaagagattggctggcccacatgaccatcgatgttgttggtacctataagccttaaatgtacttggcaattcatttttaacc |
26817503 |
T |
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| Q |
101 |
tata |
104 |
Q |
| |
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|||| |
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| T |
26817504 |
tata |
26817507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 26784328 - 26784431
Alignment:
| Q |
1 |
ctccataacaatttttctgaaaagatttgctggcccacatgaccatcgatgttgttggtacctataggcctttaaagtacttggtaattcgtttttaacc |
100 |
Q |
| |
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|||||||| ||||| ||||||||||| || || |||||||||||||||||||||||||| |||||||| ||||||||||| || ||||| ||||||||| |
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| T |
26784328 |
ctccataatcattttcctgaaaagattggccggtccacatgaccatcgatgttgttggtatctataggcatttaaagtactgggcaattcatttttaacc |
26784427 |
T |
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| Q |
101 |
tata |
104 |
Q |
| |
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|||| |
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| T |
26784428 |
tata |
26784431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 26784554 - 26784609
Alignment:
| Q |
183 |
attggattaagaaaatggaacctgtaaattggagagatataggaatttccatcctt |
238 |
Q |
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|||| |||||| |||||||||||||| ||||||||| |||| |||||||||||||| |
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| T |
26784554 |
attgaattaagtaaatggaacctgtatattggagaggtataagaatttccatcctt |
26784609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 26831263 - 26831321
Alignment:
| Q |
188 |
attaagaaaatggaacctgtaaattggagagatataggaatttccatcctttgatactg |
246 |
Q |
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||||||||||| ||||||| |||| |||||| |||| ||||||||||||||||| |||| |
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| T |
26831263 |
attaagaaaatcgaacctgcaaatcggagaggtataagaatttccatcctttgagactg |
26831321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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