View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_182 (Length: 249)
Name: NF15941_low_182
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_182 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 40212267 - 40212505
Alignment:
| Q |
1 |
acatatcatgaacttcgtttctggtagtttaagcattaatattataaagtataaactatcaaataatatgtatcttataaaatattaattcacttccctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40212267 |
acatatcatgaacttcgtttctggtagtttaagcattaatattataaagtataaactataaaataatatgtatcttataaaatattaattcacttccctt |
40212366 |
T |
|
| Q |
101 |
agaactcaaaacagaaaacatgtcaacacggttttctgttgggatttctttaacgcggttcagattttggacggcaacgtaaaatacagaaatacttatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40212367 |
agaactcaaaacagaaaacatgtcaacacggttttctgttgggatttctttaacgcggttcagattttggacggcaacgtaaaatacagaaatacttatt |
40212466 |
T |
|
| Q |
201 |
gcattttgcaaatcctaatactaatatatacaatttcat |
239 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
40212467 |
gcattttgcaaatcctaatactaatatatacaatgtcat |
40212505 |
T |
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