View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_190 (Length: 240)
Name: NF15941_low_190
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_190 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 3408228 - 3408007
Alignment:
| Q |
19 |
ttcttggttaaaacagacaagaaagtagccatcaaccattgagatacttccattctttgttcatctcctttgaaggtagttctcaagcaacttaaaattc |
118 |
Q |
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| T |
3408228 |
ttcttggttaaaacagacaagaaagtagccatcaaccattgagatacttccattctttgttcatctcctttgaaggtagttctcaagcaacttaaaattc |
3408129 |
T |
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| Q |
119 |
acattatttcccaaaatcttgatagtcaaagagtatttaataatattgtatctttatatagtttacttatttaaattttacaacattgggtattgttacc |
218 |
Q |
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| T |
3408128 |
acattatttcccaaaatcttgatagtcaaagagtatttaataatattgtacctttatatagtttacttatttaaattttacaacattgggtactgttacc |
3408029 |
T |
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| Q |
219 |
aatatttctttacgagtatatc |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
3408028 |
aatatttctttacgagtatatc |
3408007 |
T |
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