View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_191 (Length: 239)

Name: NF15941_low_191
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_191
NF15941_low_191
[»] chr3 (2 HSPs)
chr3 (109-223)||(26492514-26492628)
chr3 (1-78)||(26492406-26492483)
[»] chr1 (1 HSPs)
chr1 (8-50)||(37747842-37747884)


Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 109 - 223
Target Start/End: Original strand, 26492514 - 26492628
Alignment:
Q  109 ccagatcagaaaatgtgtgattcatttgctatatttgttgcctttgaataccttctttcggaactgagcttgcatattttttgaccagtctagtgatgaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26492514 ccagatcagaaaatgtgtgattcatttgctatatttgttgcctttgaataccttctttcggaactgagcttgcatattttttgaccagtctagtgatgaa 26492613  T
Q  209 gtcgcggcagaggat 223  Q
    |||||||||||||||    
T  26492614 gtcgcggcagaggat 26492628  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 26492406 - 26492483
Alignment:
Q  1 cttattctcttcacaataaccaataagattcacaaaattcttgtggttcaaccttgataacatctcaatctgaaagac 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26492406 cttattctcttcacaataaccaataagattcacaaaattcttgtggttcaaccttgataacatctcaatctgaaagac 26492483  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 37747842 - 37747884
Alignment:
Q  8 tcttcacaataaccaataagattcacaaaattcttgtggttca 50  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  37747842 tcttcacaatatccaataagattgacaaaattcttgtggttca 37747884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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