View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_low_195 (Length: 238)
Name: NF15941_low_195
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_195 |
 | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
| [»] scaffold0186 (1 HSPs) |
| | |
|
| [»] scaffold0031 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 13811189 - 13811416
Alignment:
| Q |
1 |
cgttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaataattgttaaattagaacttcatgatgaagaaattaatcatattagggtat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13811189 |
cgttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaataattgttgaattagaaattcatgatgaagaaattaatcatattagggtat |
13811288 |
T |
|
| Q |
101 |
gatactgagttagtgagaatttaggtttaaatgcagcttgatagtatttagttgtttagttcataattgagttaaaatctatgttatttgctactgtctg |
200 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13811289 |
gatactgagttggtgagaatttagggttaaatgaaacttgatagtatttagttgtttagttcataattgagttaaaatctatgttatttgctactgtctg |
13811388 |
T |
|
| Q |
201 |
attgttgcatttttgggttgttgatgat |
228 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
13811389 |
attgttgcatttttggattgttgatgat |
13811416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 71 - 211
Target Start/End: Complemental strand, 4270862 - 4270722
Alignment:
| Q |
71 |
atgatgaagaaattaatcatattagggtatgatactgagttagtgagaatttaggtttaaatgcagcttgatagtatttagttgtttagttcataattga |
170 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||| ||||| || ||||| ||||||||||||||||| |||||||||||||||| | |
|
|
| T |
4270862 |
atgatgaagaaattaatcatattaggatatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaa |
4270763 |
T |
|
| Q |
171 |
gttaaaatctatgttatttgctactgtctgattgttgcatt |
211 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
4270762 |
gttaaaatctctgttatttgctactgtttgattgttgcatt |
4270722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 12213583 - 12213491
Alignment:
| Q |
37 |
gtgaaggctaaaataattgttaaattagaacttcatgatgaagaaattaatcatattagggtatgatactgagttagtgagaatttaggtttaaat |
132 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
12213583 |
gtgaaggctaaaataattgttgaattagaaattcatga---agaaattaatcatattagggtatgatactgagttagtgataatttagggttaaat |
12213491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 12215662 - 12215609
Alignment:
| Q |
1 |
cgttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaataatt |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12215662 |
cgttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaataatt |
12215609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 12213428 - 12213375
Alignment:
| Q |
175 |
aaatctatgttatttgctactgtctgattgttgcatttttgggttgttgatgat |
228 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12213428 |
aaatctgtgttattttctactgtctgattgttgcatttttgggttgttgatgat |
12213375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 12213482 - 12213440
Alignment:
| Q |
89 |
atattagggtatgatactgagttagtgagaatttaggtttaaa |
131 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
12213482 |
atattagggtatgatactgagttagtgataatttagggttaaa |
12213440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 116009 - 115783
Alignment:
| Q |
1 |
cgttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaataattgttaaattagaacttcatgatgaagaaattaatcatattagggtat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
116009 |
cgttaaaggtgatgtttatctcaaatcttgtatttggtgaagggtaaaataattgtttaattataaattcatgatgaagaaattaatcatattagggtat |
115910 |
T |
|
| Q |
101 |
gatactgagttagtgagaatttaggtttaaatgcagcttgatagtatttagttgtttagttcataattgagttaaaatctatgttatttgctactgtctg |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
115909 |
gatactgagttagtgagaatttagggttaaatgaagcttgatagta-ttagttgtttagttcataattgagttaaaatctatattatttgctactgtctg |
115811 |
T |
|
| Q |
201 |
attgttgcatttttgggttgttgatgat |
228 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
115810 |
attgttgcatttttggattgttgatgat |
115783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 30463 - 30240
Alignment:
| Q |
1 |
cgttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaataattgttaaattagaacttcatgatgaagaaattaatcatattagggtat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30463 |
cgttaaaggtgatgtttatctcaaatcttgtatttggtgaagggtaaaataattgttgaattagaaaatcatgatgaagaaattaatcatattagggtat |
30364 |
T |
|
| Q |
101 |
gatactgagttagtgagaatttaggtttaaatgcagcttgatagtatttagttgtttagttcataattgagttaaaatctatgttatttgctactgtctg |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30363 |
gatactgagttagtgagaatttagggttaaatg----atgatagtatttagttgtttagttcataattgagttaaaatctatgttatttgctactgtctg |
30268 |
T |
|
| Q |
201 |
attgttgcatttttgggttgttgatgat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
30267 |
attgttgcatttttgggttgttgatgat |
30240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 9691496 - 9691273
Alignment:
| Q |
1 |
cgttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaataattgttaaattagaacttcatgatgaagaaattaatcatattagggtat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
9691496 |
cgttaaaggtgatgtttatctcaaatcttgtatttggtgaagggtaaaataattgttgaattataaattcatgatgaagaaattaatcatattagggtat |
9691397 |
T |
|
| Q |
101 |
gatactgagttagtgagaatttaggtttaaatgcagcttgatagtatttagttgtttagttcataattgagttaaaatctatgttatttgctactgtctg |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9691396 |
gatactgagttagtgagaatttagggttaaatg----atgatagtatttagttatttagttcataattgagttaaaatctatgttatttgctactgtcag |
9691301 |
T |
|
| Q |
201 |
attgttgcatttttgggttgttgatgat |
228 |
Q |
| |
|
||||||| |||||||||||||||||||| |
|
|
| T |
9691300 |
attgttgtatttttgggttgttgatgat |
9691273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 9805684 - 9805553
Alignment:
| Q |
1 |
cgttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaataattgttaaattagaacttcatgatgaagaaattaatcatattagggtat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9805684 |
cgttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaataattgttgaattagaaattcatgatgaagaaattaatcatattagggtat |
9805585 |
T |
|
| Q |
101 |
gatactgagttagtgagaatttaggtttaaat |
132 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| |
|
|
| T |
9805584 |
gatactgagttagtgataatttagggttaaat |
9805553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 71 - 211
Target Start/End: Complemental strand, 6610230 - 6610090
Alignment:
| Q |
71 |
atgatgaagaaattaatcatattagggtatgatactgagttagtgagaatttaggtttaaatgcagcttgatagtatttagttgtttagttcataattga |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||| || ||||| || |||||||||||||| |||||||||||||||| | |
|
|
| T |
6610230 |
atgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagtttgatagtatttagatgtttagttcataattaa |
6610131 |
T |
|
| Q |
171 |
gttaaaatctatgttatttgctactgtctgattgttgcatt |
211 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
6610130 |
gttaaaatctctgttatttgctactgtttgattgttgcatt |
6610090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 71 - 211
Target Start/End: Original strand, 6623898 - 6624038
Alignment:
| Q |
71 |
atgatgaagaaattaatcatattagggtatgatactgagttagtgagaatttaggtttaaatgcagcttgatagtatttagttgtttagttcataattga |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||| || ||||| || |||||||||||||| |||||||||||||||| | |
|
|
| T |
6623898 |
atgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagtttgatagtatttagatgtttagttcataattaa |
6623997 |
T |
|
| Q |
171 |
gttaaaatctatgttatttgctactgtctgattgttgcatt |
211 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
6623998 |
gttaaaatctctgttatttgctactgtttgattgttgcatt |
6624038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 71 - 211
Target Start/End: Complemental strand, 41552117 - 41551977
Alignment:
| Q |
71 |
atgatgaagaaattaatcatattagggtatgatactgagttagtgagaatttaggtttaaatgcagcttgatagtatttagttgtttagttcataattga |
170 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||| ||||| || ||||| ||||||||||||||||| |||||||||||||||| | |
|
|
| T |
41552117 |
atgatgaagaaattaatcatattaggatatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaa |
41552018 |
T |
|
| Q |
171 |
gttaaaatctatgttatttgctactgtctgattgttgcatt |
211 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
41552017 |
gttaaaatctctgttatttgctactgtttgattgttgcatt |
41551977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 22242325 - 22242289
Alignment:
| Q |
192 |
tactgtctgattgttgcatttttgggttgttgatgat |
228 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22242325 |
tactgtatgattgttgcatttttgggttgttgatgat |
22242289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 22043187 - 22043412
Alignment:
| Q |
2 |
gttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaataattgttaaattagaacttcatgatgaagaaattaatcatattagggtatg |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||| || |||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
22043187 |
gttaaaggtgatgtttatctcaaatcttgtatttgatgaagg-taaaataatttttgaattagaaattcatgataaagaaattaatcatattagggtatg |
22043285 |
T |
|
| Q |
102 |
atactgagttagtgagaatttaggtttaaatgcagcttgatagtatttagttgtttagttcataattgagttaaaatctatgttatttgctactgtctga |
201 |
Q |
| |
|
||||| | |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
22043286 |
atacttacttagtgagaatttagggttaaatgaagcttgatagtatttagttgtttagttcataattgagttaaaatctatgttattttctaccgtctga |
22043385 |
T |
|
| Q |
202 |
ttgttgcatttttgggttgttgatgat |
228 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
22043386 |
ttgttgcatttttgggttgttgatgat |
22043412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 180
Target Start/End: Complemental strand, 22879466 - 22879350
Alignment:
| Q |
59 |
aattagaacttcatgatgaagaaattaatcatattagggtatgatactgagttagtgagaatttaggtttaaatgcagcttgatagtatttagttgttta |
158 |
Q |
| |
|
|||||||| |||||| || ||||||||||||||||| ||||| ||| || ||||||||| | |||| || ||| ||||||||||||| ||||| |
|
|
| T |
22879466 |
aattagaatttcatggtgtagaaattaatcatatta-----tgatattgattttgtgagaattatgagttaattgaagcctgatagtatttagaagttta |
22879372 |
T |
|
| Q |
159 |
gttcataattgagttaaaatct |
180 |
Q |
| |
|
| |||||||| |||||||||| |
|
|
| T |
22879371 |
ggtcataattttgttaaaatct |
22879350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 180
Target Start/End: Complemental strand, 22897586 - 22897470
Alignment:
| Q |
59 |
aattagaacttcatgatgaagaaattaatcatattagggtatgatactgagttagtgagaatttaggtttaaatgcagcttgatagtatttagttgttta |
158 |
Q |
| |
|
|||||||| |||||| || ||||||||||||||||| ||||| ||| || ||||||||| | |||| || ||| ||||||||||||| ||||| |
|
|
| T |
22897586 |
aattagaatttcatggtgtagaaattaatcatatta-----tgatattgattttgtgagaattatgagttaattgaagcctgatagtatttagaagttta |
22897492 |
T |
|
| Q |
159 |
gttcataattgagttaaaatct |
180 |
Q |
| |
|
| |||||||| |||||||||| |
|
|
| T |
22897491 |
ggtcataattttgttaaaatct |
22897470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 13557873 - 13557650
Alignment:
| Q |
1 |
cgttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaataattgttaaattagaacttcatgatgaagaaattaatcatattagggtat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
13557873 |
cgttaaaggtgatgtttatctcaaatcttgtatttggtgaagggtaaaataattgttgaattataaattcatgatgaagaaattaatcatattagggtat |
13557774 |
T |
|
| Q |
101 |
gatactgagttagtgagaatttaggtttaaatgcagcttgatagtatttagttgtttagttcataattgagttaaaatctatgttatttgctactgtctg |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
13557773 |
gatactgagttagtgagaatttagggttaaatg----atgatagtatttagttatttagttcataattgagttaaaatctatgttatttgctactgtcag |
13557678 |
T |
|
| Q |
201 |
attgttgcatttttgggttgttgatgat |
228 |
Q |
| |
|
||||||| |||||||||||||||||||| |
|
|
| T |
13557677 |
attgttgtatttttgggttgttgatgat |
13557650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 71 - 211
Target Start/End: Complemental strand, 55045416 - 55045276
Alignment:
| Q |
71 |
atgatgaagaaattaatcatattagggtatgatactgagttagtgagaatttaggtttaaatgcagcttgatagtatttagttgtttagttcataattga |
170 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||| ||||| || ||||| ||||||||||||||||| |||||||||||||||| | |
|
|
| T |
55045416 |
atgatgaagaaattaatcatattaggatatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaa |
55045317 |
T |
|
| Q |
171 |
gttaaaatctatgttatttgctactgtctgattgttgcatt |
211 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
55045316 |
gttaaaatctctgttatttgctactgtttgattgttgcatt |
55045276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 44353566 - 44353791
Alignment:
| Q |
2 |
gttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaataattgttaaattagaacttcatgatgaagaaattaatcatattagggtatg |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||| || |||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
44353566 |
gttaaaggtgatgtttatctcaaatcttgtatttgatgaagg-taaaataatttttgaattagaaattcatgataaagaaattaatcatattagggtatg |
44353664 |
T |
|
| Q |
102 |
atactgagttagtgagaatttaggtttaaatgcagcttgatagtatttagttgtttagttcataattgagttaaaatctatgttatttgctactgtctga |
201 |
Q |
| |
|
||||| | |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
44353665 |
atacttacttagtgagaatttagggttaaatgaagcttgatagtatttagttgtttagttcataattgagttaaaatctatgttattttctaccgtctga |
44353764 |
T |
|
| Q |
202 |
ttgttgcatttttgggttgttgatgat |
228 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
44353765 |
ttgttgcatttttgggttgttgatgat |
44353791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 59 - 180
Target Start/End: Complemental strand, 198343 - 198222
Alignment:
| Q |
59 |
aattagaacttcatgatgaagaaattaatcatattagggtatgatactgagttagtgagaatttaggtttaaatgcagcttgatagtatttagttgttta |
158 |
Q |
| |
|
|||||||| |||||| || ||||||||||||||||||||||||||||||| || ||||||||| || |||| || | | ||||||||||||| ||||| |
|
|
| T |
198343 |
aattagaatttcatggtgtagaaattaatcatattagggtatgatactgattttgtgagaattatgggttaattgaaacctgatagtatttagaagttta |
198244 |
T |
|
| Q |
159 |
gttcataattgagttaaaatct |
180 |
Q |
| |
|
| |||||||| |||||||||| |
|
|
| T |
198243 |
ggtcataattttgttaaaatct |
198222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 130
Target Start/End: Original strand, 2499641 - 2499769
Alignment:
| Q |
2 |
gttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaataattgttaaattagaacttcatgatgaagaaattaatcatattagggtatg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
2499641 |
gttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaataattgttgaattagaaattcttgatgaagaaattaatcatattagggtatg |
2499740 |
T |
|
| Q |
102 |
atactgagttagtgagaatttaggtttaa |
130 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
|
|
| T |
2499741 |
atactgagttagtgagaatttagggttaa |
2499769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 2 - 133
Target Start/End: Complemental strand, 2503882 - 2503751
Alignment:
| Q |
2 |
gttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaataattgttaaattagaacttcatgatgaagaaattaatcatattagggtatg |
101 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
2503882 |
gttaaagatgatgtttttctcaaatcttgtatttggtgaaggctaaaataattgttcaattagaaattcctgatgaagaaattaatcatattagggtatg |
2503783 |
T |
|
| Q |
102 |
atactgagttagtgagaatttaggtttaaatg |
133 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
2503782 |
atactgagttagtgagaatttagggttaaatg |
2503751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 107
Target Start/End: Complemental strand, 2503753 - 2503720
Alignment:
| Q |
74 |
atgaagaaattaatcatattagggtatgatactg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
2503753 |
atgaagaaattaatcatattagggtatgatactg |
2503720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 31397674 - 31397638
Alignment:
| Q |
192 |
tactgtctgattgttgcatttttgggttgttgatgat |
228 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31397674 |
tactgtatgattgttgcatttttgggttgttgatgat |
31397638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 106
Target Start/End: Original strand, 2499771 - 2499802
Alignment:
| Q |
75 |
tgaagaaattaatcatattagggtatgatact |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2499771 |
tgaagaaattaatcatattagggtatgatact |
2499802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 2503721 - 2503682
Alignment:
| Q |
189 |
tgctactgtctgattgttgcatttttgggttgttgatgat |
228 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
2503721 |
tgctactgtatgattcttgcatttttgggttgttgatgat |
2503682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 2499805 - 2499841
Alignment:
| Q |
192 |
tactgtctgattgttgcatttttgggttgttgatgat |
228 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
2499805 |
tactgtatgattcttgcatttttgggttgttgatgat |
2499841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 71 - 211
Target Start/End: Original strand, 23672993 - 23673133
Alignment:
| Q |
71 |
atgatgaagaaattaatcatattagggtatgatactgagttagtgagaatttaggtttaaatgcagcttgatagtatttagttgtttagttcataattga |
170 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||| ||||| || ||||| ||||||||||||||||| |||||||||||||||| | |
|
|
| T |
23672993 |
atgatgaagaaattaatcatattaggatatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaa |
23673092 |
T |
|
| Q |
171 |
gttaaaatctatgttatttgctactgtctgattgttgcatt |
211 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
23673093 |
gttaaaatctctgttatttgctactgtttgattgttgcatt |
23673133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 71 - 211
Target Start/End: Original strand, 19145657 - 19145797
Alignment:
| Q |
71 |
atgatgaagaaattaatcatattagggtatgatactgagttagtgagaatttaggtttaaatgcagcttgatagtatttagttgtttagttcataattga |
170 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||| ||||| || ||||| ||||||||||||||||| |||||||||||||||| | |
|
|
| T |
19145657 |
atgatgaagaaattaatcatattaggatatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaa |
19145756 |
T |
|
| Q |
171 |
gttaaaatctatgttatttgctactgtctgattgttgcatt |
211 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
19145757 |
gttaaaatctctgttatttgctattgtttgattgttgcatt |
19145797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 180
Target Start/End: Complemental strand, 17229698 - 17229577
Alignment:
| Q |
59 |
aattagaacttcatgatgaagaaattaatcatattagggtatgatactgagttagtgagaatttaggtttaaatgcagcttgatagtatttagttgttta |
158 |
Q |
| |
|
|||||||| |||||| || |||||||||||||||||||| |||||||||| || ||||||||| || |||| || | | | |||||| |||| ||||| |
|
|
| T |
17229698 |
aattagaatttcatggtgtagaaattaatcatattagggaatgatactgattttgtgagaattatgggttaattgaaacctaatagtaattagaagttta |
17229599 |
T |
|
| Q |
159 |
gttcataattgagttaaaatct |
180 |
Q |
| |
|
| |||||||| |||||||||| |
|
|
| T |
17229598 |
gctcataattttgttaaaatct |
17229577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 38241580 - 38241624
Alignment:
| Q |
6 |
aaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaat |
50 |
Q |
| |
|
|||||||||||||||||| || ||| ||||||||||| ||||||| |
|
|
| T |
38241580 |
aaggtgatgtttatctcatattttgcatttggtgaagactaaaat |
38241624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 213
Target Start/End: Complemental strand, 41000 - 40843
Alignment:
| Q |
56 |
ttaaattagaacttcatgatgaagaaattaatcatattagggtatgatactgagttagtgagaatttaggtttaaatgcagcttgatagtatttagttgt |
155 |
Q |
| |
|
||||||||||| |||||||| ||||||| ||||| |||||| ||||||||||| |||||||||| || | ||||||| | |||||||||||||| || |
|
|
| T |
41000 |
ttaaattagaaattcatgatcaagaaatcaatcaaattaggttatgatactgatttagtgagaactttgagttaaatgaaacttgatagtatttaaaagt |
40901 |
T |
|
| Q |
156 |
ttagttcataattgagttaaaatctatgttatttgctactgtctgattgttgcatttt |
213 |
Q |
| |
|
||| ||||||||| ||||||| | ||||||||||||||||||||| ||||||||| |
|
|
| T |
40900 |
ttacttcataattatcttaaaatttctgttatttgctactgtctgatatttgcatttt |
40843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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