View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_198 (Length: 236)
Name: NF15941_low_198
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_198 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26790507 - 26790287
Alignment:
| Q |
1 |
catttgtgttctattgcatattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcaccct |
100 |
Q |
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| T |
26790507 |
catttgtgttctattgcatattgttacctgcaactgttatggttcctgaggttgtggtccctaaatggggaactgtttatgtcccttccatcatcaccct |
26790408 |
T |
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| Q |
101 |
tcttaaagctgttggaacaccaaggtctttatttactcaacttttcatttcatctatttgcctcaacctaggtttggttttacagacacgcatctcaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26790407 |
tcttaaagctgttggaacaccaaggtctttatttactcaacttttcatttcatctatttgcctcaacctaggtttggttttacagacacacatctcaaaa |
26790308 |
T |
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| Q |
201 |
tcacgtttgagttggtccaac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
26790307 |
tcacgtttgagttggtccaac |
26790287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 26817217 - 26817002
Alignment:
| Q |
1 |
catttgtgttctattgcatattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcaccct |
100 |
Q |
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||||||||||||||||| | |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26817217 |
catttgtgttctattgcgttctgttacctgcaactgttatggtgcctgagattgtggtccctaaatggggaactgtttatgtcccttccatcatcaccct |
26817118 |
T |
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| Q |
101 |
tcttaaagctgttggaacaccaaggtctttatttactcaacttttcatttcatctatttgcctcaacctaggtttggttttacagacacgcatctcaaaa |
200 |
Q |
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| T |
26817117 |
tctaaaagctgttggaacaccaaggtctttatttactcaacttttccttttttatatttgcctagatctatgtttggttctaca-tcacacatcctaaaa |
26817019 |
T |
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| Q |
201 |
tcacgtttgagttggtc |
217 |
Q |
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|||| |||| ||||||| |
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| T |
26817018 |
tcacttttgggttggtc |
26817002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 26830860 - 26830735
Alignment:
| Q |
1 |
catttgtgttctattgcatattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcaccct |
100 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| |
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| T |
26830860 |
catttgttttctattgcattgtgttacctgcaactgttatggtacctgaggttgtggtccctaaatggggagctgtttatatcccttccatcatcaccct |
26830761 |
T |
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| Q |
101 |
tcttaaagctgttggaacaccaaggt |
126 |
Q |
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| | || ||||||||||| ||||||| |
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| T |
26830760 |
tttaaatgctgttggaactccaaggt |
26830735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 26784139 - 26783975
Alignment:
| Q |
1 |
catttgtgttctattgcatattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcaccct |
100 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
26784139 |
catttgtgttatattgcattgtgttacctgcaactgttatggtgcctgagattgtggtccctaaatggggaactgtttatatccctaccatcatcaccct |
26784040 |
T |
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| Q |
101 |
tcttaaagctgttggaacaccaaggtctttatttactcaacttttcatttcatctatttgcctcaa |
166 |
Q |
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|| || || |||| | ||||||||||||| |||||| |||||||||| || || ||||| ||||| |
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| T |
26784039 |
cctaaacgcggttgcagcaccaaggtcttt-tttacttaacttttcatctcttccatttgtctcaa |
26783975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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