View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_199 (Length: 236)
Name: NF15941_low_199
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_199 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 29907999 - 29908210
Alignment:
| Q |
11 |
caaaggcaaacaaacagcaatacaaaccttctcatcaacaaacaccatctcaatcgaattgatctgttatgattgaagaaaagcacgcacctcccacaaa |
110 |
Q |
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| T |
29907999 |
caaaggcaaacaaacagcaatacaaaccttctcatcaacaaacaccatctcaattgaattgatctgttatgattgaagaaaatcacgcacctcccacaaa |
29908098 |
T |
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| Q |
111 |
cgaacaacatgaagcttgaatccccaagactcctttccaggaacaacatcagacaccaaatcaaagctgcgatacctctgtgaccagacctaagaccctt |
210 |
Q |
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| T |
29908099 |
cgaacaacacgaagcttgaatctccaagactctcttccaggaagaacatcagacagcaaatcaaagctgcgatacctctgtgaccagacctaagaccctt |
29908198 |
T |
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| Q |
211 |
gttatcaaacct |
222 |
Q |
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|||||||||||| |
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| T |
29908199 |
gttatcaaacct |
29908210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 180
Target Start/End: Original strand, 29908839 - 29908984
Alignment:
| Q |
35 |
aaccttctcatcaacaaacaccatctcaatcgaattgatctgttatgattgaagaaaagcacgcacctcccacaaacgaacaacatgaagcttgaatccc |
134 |
Q |
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||||||||||||||| ||||||||||||| |||||| | ||||| | |||||||| ||| | ||||||||| ||| || ||| ||| |||||| | |
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| T |
29908839 |
aaccttctcatcaaccaacaccatctcaaccgaattcacctgttcaggatgaagaaacgcaggagcctcccacagacgcaccacacgaacaatgaatctc |
29908938 |
T |
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| Q |
135 |
caagactcctttccaggaacaacatcagacaccaaatcaaagctgc |
180 |
Q |
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|||||||||||||||||| || ||||||| | || |||||| |||| |
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| T |
29908939 |
caagactcctttccaggagcagcatcagataacagatcaaaactgc |
29908984 |
T |
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