View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_20 (Length: 527)
Name: NF15941_low_20
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 35159361 - 35159663
Alignment:
| Q |
18 |
aacaactcaacgtcgtcttctttggacaatggcgaagaatgtttcatcaacctactgtggataggcaagtgcaacaaacatgacatgtcatctactgtga |
117 |
Q |
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| T |
35159361 |
aacaactcaacgtcgtgttctttggacaatggcgaagaatgtttcatcaacctactgtggataggcaagtgcaacaaacatgacatgtcatctactgtga |
35159460 |
T |
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| Q |
118 |
tggttatctcatcaatggaaaaatgaaaactactactctctttgtgtgtgaatgatgtacataggcttgaatatgaccgtaggagtattatcaagttgag |
217 |
Q |
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| T |
35159461 |
tggttatctcatcaatggaaaaatgaaaattactactctctttgtgtgtgaatgatgtacataggcttgaatatgaccgtaggagtattatcaagttgag |
35159560 |
T |
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| Q |
218 |
aaaaactcgaagcatgtactacatcccaaaacaatatatgttactgtgatggtttattgagtttgatggttgatgcatttgagacatggtttctcaggtg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35159561 |
aaaaactcgaagcatgtactacatcccaaaacaatatatgttattttgatggtttattgagtttgatggttgatgcatttgagacatggtttctcacgtg |
35159660 |
T |
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| Q |
318 |
ctt |
320 |
Q |
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||| |
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| T |
35159661 |
ctt |
35159663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 394 - 517
Target Start/End: Original strand, 35159737 - 35159863
Alignment:
| Q |
394 |
ttacttatgcaatcaatatcaaattcagcggtagtggtttatgagaagaacca---ccaccaaatctcatatcaactttgtccggtggtggtgatgtgtc |
490 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35159737 |
ttacttatgcaatcaatatcaaattcagcggcagtggtttatcagaagaaccaccaccaccaaatctcatatcaactttgtcccgtggtggtgatgtgtc |
35159836 |
T |
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| Q |
491 |
ttatgacggaacatgtgacaacctatg |
517 |
Q |
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| T |
35159837 |
ttatggcggaacatgtgacaatctatg |
35159863 |
T |
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