View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_200 (Length: 235)
Name: NF15941_low_200
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_200 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 48387817 - 48387612
Alignment:
| Q |
19 |
agctcctgtgtgctaatgtaacatgatagatttgtttctactctgaatttcctcaataagaattaagctttatagttcattgtggtttttaacagacaat |
118 |
Q |
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| T |
48387817 |
agctcctgtgtgctaatgtaacatgatagatttgtttctactctgaatttcctcaataagaattaagctttatagttcattgtgatttttaacagacaat |
48387718 |
T |
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| Q |
119 |
ctatgaggtctttctttagggtgctacttttctcccgacctcgtaactaaaattccctatgtttttagaagtatacttctgaacgacacaaaattaatag |
218 |
Q |
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| T |
48387717 |
ctatgaggtctttctttagggtgctacttttctcccgaccttgtaactaaaattccctatgtttttagaagtatacttctgaacgacacaaaattaataa |
48387618 |
T |
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| Q |
219 |
aataat |
224 |
Q |
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|||||| |
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| T |
48387617 |
aataat |
48387612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 9995679 - 9995749
Alignment:
| Q |
147 |
tttctcccgacctcgtaactaaaattccctatgtttttagaagtatacttctgaacgacacaaaattaata |
217 |
Q |
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| T |
9995679 |
tttctcccgacctcgtaactaaaatttcctatgcttttagaagtatacttctgaacgatacaaaattaata |
9995749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 10358870 - 10358800
Alignment:
| Q |
147 |
tttctcccgacctcgtaactaaaattccctatgtttttagaagtatacttctgaacgacacaaaattaata |
217 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| |
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| T |
10358870 |
tttctcccgacctcgtaactaaaattccatatgcttttagaagtatacttctgaacgatacaaaattaata |
10358800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 10131352 - 10131421
Alignment:
| Q |
147 |
tttctcccgacctcgtaactaaaattccctatgtttttagaagtatacttctgaacgacacaaaattaata |
217 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||| |
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| T |
10131352 |
tttctcccgacctcgtaactaaaattccctatg-ttttagaagtatacttctgaaccatacaaaattaata |
10131421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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