View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_202 (Length: 234)
Name: NF15941_low_202
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_202 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 4169262 - 4169468
Alignment:
| Q |
13 |
ggtacaaaagggtgtacatattaaagttgactatcaatctttattcaaatacaaatgcggtggttctgagtcgatacttactttaatatggtggtaacgt |
112 |
Q |
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| T |
4169262 |
ggtacaaaagggt--acatattaaagttgactatcaatctttattcaaatacaaatgcagtggttctgaggcgatacctactttaatatggtggtaacgt |
4169359 |
T |
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| Q |
113 |
gcagaaattggattggaaaaggtgtaatacttgcaatagagatggtgtaaacccagtgaaatcgtttgggatactatgatagtttcaactcttcaaatca |
212 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
4169360 |
gcaggaattggattggaaaaggtgtaatacttgcaatagagatggtgtaaacccagtgaaatcgtttgggataccatgatagtttcaactcttcatatca |
4169459 |
T |
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| Q |
213 |
catgaaata |
221 |
Q |
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||||||||| |
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| T |
4169460 |
catgaaata |
4169468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 3785917 - 3785860
Alignment:
| Q |
1 |
atttttgagagtggtacaaaagggtgtacatattaaagttgactatcaatctttattc |
58 |
Q |
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| T |
3785917 |
attttcgagagtggtacaaaggggtgtacacattaagggtgtctaccaatctttattc |
3785860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 9710872 - 9710929
Alignment:
| Q |
1 |
atttttgagagtggtacaaaagggtgtacatattaaagttgactatcaatctttattc |
58 |
Q |
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| T |
9710872 |
atttttcagagtggtacaaaggggtgtacatattaagggtttctaccaatctttattc |
9710929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 19596735 - 19596680
Alignment:
| Q |
1 |
atttttgagagtggtacaaaagggtgtacatattaaagttgactatcaatctttat |
56 |
Q |
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|||||| ||||||||||||| ||||||||| ||||||| || |||||||||||||| |
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| T |
19596735 |
atttttcagagtggtacaaaggggtgtacacattaaagatgtctatcaatctttat |
19596680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 30906205 - 30906263
Alignment:
| Q |
1 |
atttttgagagtggtacaaaagggtgtacatattaaagttgactatcaatctttattca |
59 |
Q |
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|||||| ||||||||||||||||||||||| ||||||| || || | ||||||||||| |
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| T |
30906205 |
atttttcagagtggtacaaaagggtgtacacattaaaggtgtgtacccatctttattca |
30906263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 1251630 - 1251687
Alignment:
| Q |
1 |
atttttgagagtggtacaaaagggtgtacatattaaagttgactatcaatctttattc |
58 |
Q |
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||||| |||||||||||||| ||||||||| ||||| | || ||| |||||||||||| |
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| T |
1251630 |
attttcgagagtggtacaaatgggtgtacacattaaggatgtctaccaatctttattc |
1251687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 31189531 - 31189474
Alignment:
| Q |
1 |
atttttgagagtggtacaaaagggtgtacatattaaagttgactatcaatctttattc |
58 |
Q |
| |
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||||| ||||||||||||||| | |||||||||||||| || || |||||||||||| |
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|
| T |
31189531 |
attttcgagagtggtacaaaatgttgtacatattaaaggtgtctgccaatctttattc |
31189474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7706814 - 7706758
Alignment:
| Q |
1 |
atttttgagagtggtacaaaagggtgtacatattaaagttgactatcaatctttatt |
57 |
Q |
| |
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|||||| ||| |||||||||||| |||||| ||||||| || |||||||||||||| |
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| T |
7706814 |
atttttcagaatggtacaaaaggatgtacacattaaaggtgtttatcaatctttatt |
7706758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 7915651 - 7915595
Alignment:
| Q |
2 |
tttttgagagtggtacaaaagggtgtacatattaaagttgactatcaatctttattc |
58 |
Q |
| |
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||||| |||||| |||||||||||||||| ||||||| || ||| | |||||||||| |
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| T |
7915651 |
tttttcagagtgatacaaaagggtgtacacattaaaggtgtctaccgatctttattc |
7915595 |
T |
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