View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_209 (Length: 229)
Name: NF15941_low_209
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_209 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 30706227 - 30706436
Alignment:
| Q |
1 |
cttccatttccagattctttaagaagaggatatgctagttgacatagatggtatgcagaatccaagttagtagtcatcacttttgaataatcttcggctg |
100 |
Q |
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| T |
30706227 |
cttccatttccagattctttaagaagaggatatgctagttgacatagatggtatgcagaatccaagttagtagtcatcacttttgaataatcttcggctg |
30706326 |
T |
|
| Q |
101 |
tatattcaattgttggcttcctcacatttgtaccagcattgtttacctaatagctcacaagattatgatatgaacataacttttattataagctgaagtc |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30706327 |
tatactcaattgttggcttcctcacatttgtaccagcattgtttacctaatagctcacaagattatgatatgaacataacttttattataagctgaagtc |
30706426 |
T |
|
| Q |
201 |
atgcatacca |
210 |
Q |
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|||||||||| |
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| T |
30706427 |
atgcatacca |
30706436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 30719210 - 30719359
Alignment:
| Q |
1 |
cttccatttccagattctttaagaagaggatatgctagttgacatagatggtatgcagaatccaagttagtagtcatcacttttgaataatcttcggctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
30719210 |
cttccatttccagattctttaagaagaggatatgtcagttggcatagatgatatgcagaatccaagttagtagtcatcactttcgaataatcttcggccg |
30719309 |
T |
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| Q |
101 |
tatattcaattgttggcttcctcacatttgtaccagcattgtttacctaa |
150 |
Q |
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|||| || ||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
30719310 |
tatactcgattgttggcttcctcacatttgttccagcattgttcacctaa |
30719359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 30699392 - 30699541
Alignment:
| Q |
1 |
cttccatttccagattctttaagaagaggatatgctagttgacatagatggtatgcagaatccaagttagtagtcatcacttttgaataatcttcggctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | || |
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| T |
30699392 |
cttccatttccagattctttaagaagaggatatgtcagttggcatagatggtatgcagaatccaagttaatagtcatcaattttgaataatcttctgttg |
30699491 |
T |
|
| Q |
101 |
tatattcaattgttggcttcctcacatttgtaccagcattgtttacctaa |
150 |
Q |
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|||| ||||||||||| |||||||||||||| ||| |||||||||||||| |
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| T |
30699492 |
tatactcaattgttggtttcctcacatttgttccaacattgtttacctaa |
30699541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 30708871 - 30708997
Alignment:
| Q |
5 |
catttccagattctttaagaagaggatatgctagttgacatagatggtatgcagaatccaagttagtagtcatcacttttgaataatcttcggctgtata |
104 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | | || |
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| T |
30708871 |
catttccagattctttaagaagaggatatgtcagttggcatagatggtatgcagaatccaagttagtaatcatcacttttgagtaatcttcggttcttta |
30708970 |
T |
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| Q |
105 |
ttcaattgttggcttcctcacatttgt |
131 |
Q |
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||| |||||||||||||||||||||| |
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| T |
30708971 |
ctcacttgttggcttcctcacatttgt |
30708997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23057881 - 23057829
Alignment:
| Q |
1 |
cttccatttccagattctttaagaagaggatatgctagttgacatagatggta |
53 |
Q |
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||||||| |||||||||||| ||||| || |||||||||||||| |||||||| |
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| T |
23057881 |
cttccatatccagattcttttagaagtgggtatgctagttgacaaagatggta |
23057829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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