View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_21 (Length: 525)

Name: NF15941_low_21
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_21
NF15941_low_21
[»] chr5 (5 HSPs)
chr5 (13-525)||(15401928-15402440)
chr5 (205-419)||(15400412-15400620)
chr5 (337-411)||(27998605-27998681)
chr5 (145-191)||(15400123-15400169)
chr5 (489-525)||(41377751-41377787)
[»] chr4 (3 HSPs)
chr4 (337-411)||(47147537-47147611)
chr4 (369-411)||(49686891-49686933)
chr4 (337-411)||(40018231-40018307)
[»] chr8 (1 HSPs)
chr8 (337-411)||(23023389-23023465)
[»] chr2 (2 HSPs)
chr2 (337-411)||(8197583-8197659)
chr2 (337-411)||(8202343-8202419)
[»] chr3 (2 HSPs)
chr3 (370-414)||(5852343-5852387)
chr3 (346-411)||(46367429-46367496)
[»] chr7 (1 HSPs)
chr7 (337-411)||(40138990-40139066)
[»] chr1 (1 HSPs)
chr1 (370-411)||(39525964-39526005)


Alignment Details
Target: chr5 (Bit Score: 501; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 13 - 525
Target Start/End: Original strand, 15401928 - 15402440
Alignment:
Q  13 aagaaaatgtaacacgcaagttttatgaataatgaacacttagcaccaaggttttaaattggtggaagtcatgtgacggttcttgacattgaggagaatc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15401928 aagaaaatgtaacacgcaagttttatgaataatgaacacttagcaccaaggttttaaattggtggaagtcatgtgacggttcttgacattgaggagaatc 15402027  T
Q  113 acgatcaaatgcagctgacgcagactcaatcgtattcacattgcaatttgcaatgaattctcttttatcaaaacctggtctgacacctttattaatacaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15402028 acgatcaaatgcagctgacgcagactcaatcgtattcacattgcaatttgcaatgaattctcttttatcaaaacctggtctgacacctttattaatacaa 15402127  T
Q  213 tttactttgttattgttttttagtaatttactctaaactctaggagtatttgattttggagtggagatcagatggaggttagtagtcaaatcgctcgagg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15402128 tttactttgttattgttttttagtaatttactctaaactctaggactatttgattttggagtggagatcagacggaggttagtagtcaaatcgctcgagg 15402227  T
Q  313 tacaggaagacttagaaaactatataagaaaggtctagagattaataaattggatagatatgataaatgatggaatattatgacgtcgtttgatccatgc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15402228 tacaggaagacttagaaaactatataagaaaggtctagagattaataaattggatagatatgataaatgatggaatattatgacgtcgtttgatccatgc 15402327  T
Q  413 agatgtactcaggtttggatttttaagtaggatcgtaaacacgagggtcgtaacacgtaggttgttgatagagttgagaggaaaagcagaggaaacaagc 512  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15402328 agatgtactcaggtttggatttttaagtaggatcgtatacacgagggtcgtaacacgtaggttgttgatagagttgagaggaaaagcagaggaaacaagc 15402427  T
Q  513 aaacaaaacagag 525  Q
    |||||||||||||    
T  15402428 aaacaaaacagag 15402440  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 205 - 419
Target Start/End: Original strand, 15400412 - 15400620
Alignment:
Q  205 taatacaatttactttgttattgtttt--ttagtaatttactctaaactctaggagtatttgattttggagtggagatcagatggaggttagtagtcaaa 302  Q
    ||||| |||||||||||||||||||||  ||||||||||||| ||||      |||||| ||||||| ||| |||||| ||||||||||||| |||||||    
T  15400412 taataaaatttactttgttattgttttctttagtaatttactataaa------gagtatgtgattttcgagcggagattagatggaggttagcagtcaaa 15400505  T
Q  303 tcgctcgaggtacaggaagacttagaaaactatataagaaaggtctagagattaataaattggatagatatgataaatgatggaatattatgacgtcgtt 402  Q
    |||||||||||| | ||||||||| |||||  ||||| || ||| |||||||||||||||| ||||||| ||||| ||||| | ||||||||||||||||    
T  15400506 tcgctcgaggtagatgaagacttaaaaaac--tataaaaagggtttagagattaataaatttgatagatgtgatatatgataggatattatgacgtcgtt 15400603  T
Q  403 tgatccatgcagatgta 419  Q
    |||||||| || |||||    
T  15400604 tgatccatacaaatgta 15400620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 337 - 411
Target Start/End: Original strand, 27998605 - 27998681
Alignment:
Q  337 taagaaaggtctagagattaataaattggatag--atatgataaatgatggaatattatgacgtcgtttgatccatg 411  Q
    |||||||| |||| |||||||| | || |||||  | |||||| ||||| |||||||||||||||||||||||||||    
T  27998605 taagaaagatctacagattaatgagttagataggaacatgatatatgatagaatattatgacgtcgtttgatccatg 27998681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 15400123 - 15400169
Alignment:
Q  145 tattcacattgcaatttgcaatgaattctcttttatcaaaacctggt 191  Q
    ||||||||||||||||||||||||| | ||| |||| ||||||||||    
T  15400123 tattcacattgcaatttgcaatgaaatatctcttattaaaacctggt 15400169  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 489 - 525
Target Start/End: Original strand, 41377751 - 41377787
Alignment:
Q  489 agaggaaaagcagaggaaacaagcaaacaaaacagag 525  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  41377751 agaggaaaaacagaggaaacaagcaaaaaaaacagag 41377787  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 337 - 411
Target Start/End: Original strand, 47147537 - 47147611
Alignment:
Q  337 taagaaaggtctagagattaataaattggatagatatgataaatgatggaatattatgacgtcgtttgatccatg 411  Q
    |||||||| ||||||||||||| | |||||||||||||||| ||||| ||| |||||| | | ||||||||||||    
T  47147537 taagaaagatctagagattaatgagttggatagatatgatatatgatagaacattatggcattgtttgatccatg 47147611  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 411
Target Start/End: Original strand, 49686891 - 49686933
Alignment:
Q  369 gatatgataaatgatggaatattatgacgtcgtttgatccatg 411  Q
    ||||||||| |||||||||||||||| |||||||||| |||||    
T  49686891 gatatgatatatgatggaatattatggcgtcgtttgaaccatg 49686933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 411
Target Start/End: Complemental strand, 40018307 - 40018231
Alignment:
Q  337 taagaaaggtctagagattaataaattggatag--atatgataaatgatggaatattatgacgtcgtttgatccatg 411  Q
    |||||||| ||||||||| ||| | ||||||||  |||||||| ||||| ||| |||| | ||||||||||||||||    
T  40018307 taagaaagatctagagatcaatgagttggatagggatatgatatatgatagaacattacggcgtcgtttgatccatg 40018231  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 411
Target Start/End: Original strand, 23023389 - 23023465
Alignment:
Q  337 taagaaaggtctagagattaataaattggatag--atatgataaatgatggaatattatgacgtcgtttgatccatg 411  Q
    |||||||| |||| |||||||| | ||||||||  | |||||| ||||| |||||||||||||||||||||||||||    
T  23023389 taagaaagatctacagattaatgagttggataggaacatgatatatgatagaatattatgacgtcgtttgatccatg 23023465  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 411
Target Start/End: Complemental strand, 8197659 - 8197583
Alignment:
Q  337 taagaaaggtctagagattaataaattggataga--tatgataaatgatggaatattatgacgtcgtttgatccatg 411  Q
    |||||||| |||| |||||||| | |||||||||  ||||||| ||||| |||||||||| ||||||||||||||||    
T  8197659 taagaaagatctaaagattaatgagttggatagaaatatgatatatgatagaatattatggcgtcgtttgatccatg 8197583  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 411
Target Start/End: Complemental strand, 8202419 - 8202343
Alignment:
Q  337 taagaaaggtctagagattaataaattggataga--tatgataaatgatggaatattatgacgtcgtttgatccatg 411  Q
    |||||||| |||| |||||||| | |||||||||  ||||||| ||||| |||||||||| ||||||||||||||||    
T  8202419 taagaaagatctaaagattaatgagttggatagaaatatgatatatgatagaatattatggcgtcgtttgatccatg 8202343  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 414
Target Start/End: Complemental strand, 5852387 - 5852343
Alignment:
Q  370 atatgataaatgatggaatattatgacgtcgtttgatccatgcag 414  Q
    |||||||| ||||| || |||||||||||||||||||||||||||    
T  5852387 atatgatatatgatagagtattatgacgtcgtttgatccatgcag 5852343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 411
Target Start/End: Complemental strand, 46367496 - 46367429
Alignment:
Q  346 tctagagattaataaattggata--gatatgataaatgatggaatattatgacgtcgtttgatccatg 411  Q
    ||||||||| ||| | |||||||  ||||||||| ||||| ||| |||||||||||||||||||||||    
T  46367496 tctagagatgaatgagttggataaggatatgatatatgatagaacattatgacgtcgtttgatccatg 46367429  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 411
Target Start/End: Complemental strand, 40139066 - 40138990
Alignment:
Q  337 taagaaaggtctagagattaataaattggataga--tatgataaatgatggaatattatgacgtcgtttgatccatg 411  Q
    |||||||| |||||||||||||   || ||||||  ||||| | ||||| ||||||||||||||| |||||||||||    
T  40139066 taagaaagatctagagattaatgcgtttgatagaaatatgacatatgatagaatattatgacgtcatttgatccatg 40138990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 411
Target Start/End: Original strand, 39525964 - 39526005
Alignment:
Q  370 atatgataaatgatggaatattatgacgtcgtttgatccatg 411  Q
    |||||||| ||||| |||||||||| ||||||||||||||||    
T  39525964 atatgatagatgatagaatattatggcgtcgtttgatccatg 39526005  T

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