View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_212 (Length: 227)
Name: NF15941_low_212
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_212 |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 39370763 - 39370672
Alignment:
| Q |
122 |
tgatggatatggtttataatgcactagtaactaaaggtgggcaaggaaagaattatggtgatcaacatggtagaagatttcaaccaaaatat |
213 |
Q |
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| T |
39370763 |
tgatggatatggtttataatgcactagtaactaaaggtgggcaaggaaagaattatggtgatcaacatggtagaagatttcaaccaaaatat |
39370672 |
T |
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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 34263699 - 34263635
Alignment:
| Q |
144 |
actagtaactaaaggtgggcaaggaaagaattatggtgatcaacatggtagaagatttcaaccaa |
208 |
Q |
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| T |
34263699 |
actagtaactaaatgcggacaatgaaagaattatggtgatcaacatgatagaagatttcaaccaa |
34263635 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 24528698 - 24528764
Alignment:
| Q |
144 |
actagtaactaaaggtgggcaaggaaagaattatggtgatcaacatggtagaagatttcaaccaaaa |
210 |
Q |
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| T |
24528698 |
actagtaactaatggttggaaaggaaagaattgtggtgatcaatatggtaggagatttcaacaaaaa |
24528764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 2354024 - 2354087
Alignment:
| Q |
144 |
actagtaactaaaggtgggcaaggaaagaattatggtgatcaacatggtagaagatttcaacca |
207 |
Q |
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| T |
2354024 |
actagtaactaacggttggtaaggaaataaatatggtgatcaatatggcataagatttcaacca |
2354087 |
T |
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