View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_214 (Length: 224)

Name: NF15941_low_214
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_214
NF15941_low_214
[»] chr2 (4 HSPs)
chr2 (159-224)||(30749379-30749444)
chr2 (74-133)||(30749518-30749577)
chr2 (191-224)||(9472621-9472654)
chr2 (162-190)||(31771722-31771750)
[»] chr5 (2 HSPs)
chr5 (183-224)||(10977011-10977052)
chr5 (188-224)||(8523832-8523868)
[»] chr8 (2 HSPs)
chr8 (190-224)||(45437568-45437602)
chr8 (188-224)||(42878902-42878938)
[»] chr3 (1 HSPs)
chr3 (191-224)||(43173883-43173916)


Alignment Details
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 30749444 - 30749379
Alignment:
Q  159 ctaaaaacatatttaacccttaaatataattaaggcttaataagtcatttgatcccctaattaatt 224  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||    
T  30749444 ctaaaaacatatttaacctttaaatataattaaggcttaataagtcatttgatttcctaattaatt 30749379  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 30749577 - 30749518
Alignment:
Q  74 ccccatccatctcttattacatcaaactttgttgtaacaatgcttaaaattagaagcaat 133  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  30749577 ccccatccatctcttattacatcaaactttgttgtaacagggcttaaaattagaagcaat 30749518  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 9472621 - 9472654
Alignment:
Q  191 aggcttaataagtcatttgatcccctaattaatt 224  Q
    |||||||||| |||||||||||||||||||||||    
T  9472621 aggcttaataggtcatttgatcccctaattaatt 9472654  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 190
Target Start/End: Original strand, 31771722 - 31771750
Alignment:
Q  162 aaaacatatttaacccttaaatataatta 190  Q
    |||||||||||||||||||||||||||||    
T  31771722 aaaacatatttaacccttaaatataatta 31771750  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 10977011 - 10977052
Alignment:
Q  183 tataattaaggcttaataagtcatttgatcccctaattaatt 224  Q
    |||| ||||||||||||| |||||||||||||||||||||||    
T  10977011 tatatttaaggcttaataggtcatttgatcccctaattaatt 10977052  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 8523868 - 8523832
Alignment:
Q  188 ttaaggcttaataagtcatttgatcccctaattaatt 224  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  8523868 ttaaggcttaataggtcatttggtcccctaattaatt 8523832  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 45437602 - 45437568
Alignment:
Q  190 aaggcttaataagtcatttgatcccctaattaatt 224  Q
    ||||||||||| |||||||||||||||||||||||    
T  45437602 aaggcttaataggtcatttgatcccctaattaatt 45437568  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 42878938 - 42878902
Alignment:
Q  188 ttaaggcttaataagtcatttgatcccctaattaatt 224  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  42878938 ttaaggcttaataggtcatttggtcccctaattaatt 42878902  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 43173883 - 43173916
Alignment:
Q  191 aggcttaataagtcatttgatcccctaattaatt 224  Q
    |||||||||| |||||||||||||||||||||||    
T  43173883 aggcttaataggtcatttgatcccctaattaatt 43173916  T

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