View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_215 (Length: 223)

Name: NF15941_low_215
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_215
NF15941_low_215
[»] chr8 (1 HSPs)
chr8 (19-211)||(35401122-35401313)
[»] chr7 (3 HSPs)
chr7 (124-174)||(11452647-11452697)
chr7 (124-173)||(11380546-11380595)
chr7 (124-170)||(11403949-11403995)


Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 35401313 - 35401122
Alignment:
Q  19 aaatgtgcatgatcatattcatataataatacacatcaagaaattataatactactatgcaatatgatttccatctattttaatagacgttcgtaaggac 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  35401313 aaatgtgcatgatcatattcatataataatacacatcaagaaattataatactactattcaatatgatttccatctcttttaatagacgttcgtaaggac 35401214  T
Q  119 gtgtgttataatatcaagagtttcagattatttattgttccattaattgaaaaggtnnnnnnnnnttcaaagagactagtgatgatgatgtcc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  35401213 gtgtgttataatatcaagagtttcagattatttattgttccattaattgaaaaggt-aaaaaaaattcaaagagactagtgatgatgatgtcc 35401122  T

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Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 11452697 - 11452647
Alignment:
Q  124 ttataatatcaagagtttcagattatttattgttccattaattgaaaaggt 174  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11452697 ttataatatcaagagtttcagattatttattgttccattcattgaaaaggt 11452647  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 11380595 - 11380546
Alignment:
Q  124 ttataatatcaagagtttcagattatttattgttccattaattgaaaagg 173  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11380595 ttataatatcaagagtttcagattatttattgttccattcattgaaaagg 11380546  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 11403995 - 11403949
Alignment:
Q  124 ttataatatcaagagtttcagattatttattgttccattaattgaaa 170  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  11403995 ttataatatcaagagtttcagattatttattgttccattcattgaaa 11403949  T

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