View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_22 (Length: 517)
Name: NF15941_low_22
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 512
Target Start/End: Original strand, 43208371 - 43208865
Alignment:
| Q |
18 |
aaaccatctcttattttgaattttcatgatggaaatcaggtcatggactctacacttggacaaattttgaaatcttcatcatcataatttgacaattatt |
117 |
Q |
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| T |
43208371 |
aaaccatctcttattttgaattttcatgatggaaatcaggtcatggactctacacttggacaaattttgaaatcttcatcatcataatttgacaattatt |
43208470 |
T |
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| Q |
118 |
taacgtgcttgataatatatttgtatatatggatacgagatttatcacgaaaattcaatagttctgctgagactttcttcaaggtaattttatgcttgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43208471 |
taacgtgcttgataatatatttgtatatatggatacgagatttatcacgaaaattcaatagttctgctgagactttcttcaaggtaattttatgcttgtt |
43208570 |
T |
|
| Q |
218 |
gtgtcgatattggagatgctcggtattgaagctgtttatgtggattaggacatgaaaatatcatatgcatgtagaggataggatttgtctcttaatatac |
317 |
Q |
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| T |
43208571 |
gtgtcgatattggagatgctcggtattgaagctgtttatgtggattaggacatgaaaatatcatatgcatgtagaggataggatttgtctcttaatatac |
43208670 |
T |
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| Q |
318 |
cttttattatcttcatggacagtgtcattgctcgaattcaacctttctgatgcccacgagttttgggatgggtgacttctaaattctaatcagtcaggta |
417 |
Q |
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| T |
43208671 |
cttttattatcttcatggacagtgtcattgctcaaattcaacctttctgatgcccacgagttttgggatgggtgacttctaaattctaatcagttaggta |
43208770 |
T |
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| Q |
418 |
tagcatttggcactcatcaatcttgctctttatttgccagccatttgaattctgctttgtgatatgtctgcgtgttttgttctgtctgtgctgct |
512 |
Q |
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| T |
43208771 |
tagcatttggcactcatcaatcttgctctttatttgccagccatttgaattctgctttgtgatatgtctgcgtgttttgttctgtttgtgttgct |
43208865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 43187623 - 43187888
Alignment:
| Q |
18 |
aaaccatctcttattttgaattttcatgatggaaatcaggtcatggactctacacttggacaaattttgaaatcttcatcatcataatttgacaattatt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| || |||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43187623 |
aaaccatctcttattttgaattttcatgatggaaatc--gtcatggacactgtacttagacaaactttgaaatcttcatcatcataatttgacaattatt |
43187720 |
T |
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| Q |
118 |
taacgtgcttgataatatatttgtatatatggatacgagatttatcacgaaaattcaatagttctgctgagactttcttcaaggtaattttatgcttgtt |
217 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||| |||||||| ||| |||||| |||||||||||||||||||||||||||||| |
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| T |
43187721 |
taacgtgcttgataatgtatttgtatatatggatacgagatttgtcacaaaaattcagtagcactgctgggactttcttcaaggtaattttatgcttgtt |
43187820 |
T |
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| Q |
218 |
gtgtcgatattggagatg-ctcggtattgaagctgtttatgtggattaggacatgaaaatatcatatg |
284 |
Q |
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| T |
43187821 |
ttgttgatattggagatgccaaggtattgaagctgtttatgtggattaggacatgaaaatatcatatg |
43187888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 277 - 507
Target Start/End: Original strand, 43188279 - 43188509
Alignment:
| Q |
277 |
atcatatgcatgtagaggataggatttgtctcttaatataccttttattatcttcatggacagtgtcattgctcgaattcaacctttctgatgcccacga |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
43188279 |
atcatatgcatgtagaggataggatttgtctcttaatatgccttttattatcttcatggacagtttcattgctcgaattcaacctttctgatgcccgcat |
43188378 |
T |
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| Q |
377 |
gttttgggatgggtgacttctaaattctaatcagtcaggtatagcatttggcactcatcaatcttgctctttatttgccagccatttgaattctgctttg |
476 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||| | |||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
43188379 |
gttttgggatgggtgacttctaaattctaatcagctaggtgtagcatttgcccctcatcaatcttgctctttatttgccggccatttgaattcaactttg |
43188478 |
T |
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| Q |
477 |
tgatatgtctgcgtgttttgttctgtctgtg |
507 |
Q |
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| T |
43188479 |
tgatacttctgtgtgttttgttctgtttgtg |
43188509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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