View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_224 (Length: 219)
Name: NF15941_low_224
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_224 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 35400941 - 35401144
Alignment:
| Q |
11 |
agcacagaacagaaagtaaagttttatgaaagagtttgaaatatctgttacaggcattatgtatgtcaacctcaaaactggatacgtgtggctttttttt |
110 |
Q |
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| T |
35400941 |
agcacggaacagaaagtaaagttttataaaag--tttgaaatatctgttacaggcattatgtatgtcaacctcaaaactggatacatgtggctttttttt |
35401038 |
T |
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| Q |
111 |
aatccatttcagaccaattgattcacttttatgcgcccnnnnnnnnnnnnnnggaattaaaaactgggcatttggttttgatttaaggacatcatcatca |
210 |
Q |
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| T |
35401039 |
aatccatttcagaccaattgattcacttttatgcgccc---tttttttttttggaattaaaaactgggcatttggttttgatttaaggacatcatcatca |
35401135 |
T |
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| Q |
211 |
ctagtctct |
219 |
Q |
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| T |
35401136 |
ctagtctct |
35401144 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 11403787 - 11403844
Alignment:
| Q |
82 |
tcaaaactggatacgtgtggcttttttttaatccatttcagaccaattgattcactttt |
140 |
Q |
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| T |
11403787 |
tcaaaactggatacatattgctttt-tttaatccatttgagaccaattgattcactttt |
11403844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 11382487 - 11382525
Alignment:
| Q |
104 |
tttttttaatccatttcagaccaattgattcacttttat |
142 |
Q |
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| T |
11382487 |
tttttataatccattttagaccaattgattcacttttat |
11382525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 11452517 - 11452559
Alignment:
| Q |
17 |
gaacagaaagtaaagttttatgaaagagtttgaaatatctgtt |
59 |
Q |
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| T |
11452517 |
gaacagaaagtaaagttccatgaaagagtttgaaatatttgtt |
11452559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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