View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_225 (Length: 219)
Name: NF15941_low_225
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_225 |
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| [»] chr2 (9 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 31292086 - 31292304
Alignment:
| Q |
1 |
gaaggaatcatactagtagtagaaaaataacttacacgtcaacgttctttttccaagcaggcaccgatccagtgagaaggtttccagttaaaaatctatc |
100 |
Q |
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| T |
31292086 |
gaaggaatcatactagtagtagaaaaataacttacacgtcaacgttctttttccaagcaggcaccgatccagtgagaaggtttccagttaaaaatctatc |
31292185 |
T |
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| Q |
101 |
ataaaagtatatcaagatattaatatgcaaagcttaatagttattgaggtgaacacaattggaaataagctaatcacaaccaattatctcttcttcccta |
200 |
Q |
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| T |
31292186 |
ataaaagtatatcaagatattaatatgcaaagcttaatagttattgaggtgaacacaattggaaataagctaatcacaaccaattatctcttcttcccta |
31292285 |
T |
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| Q |
201 |
cgaatggttgaattgattt |
219 |
Q |
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||||||||||||||||||| |
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| T |
31292286 |
cgaatggttgaattgattt |
31292304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 31255116 - 31255295
Alignment:
| Q |
14 |
tagtagtagaaaaataacttacacgtcaacgttctttttccaagcaggcaccgatccagtgagaaggtttccagttaaaaatctatcataaaagtatatc |
113 |
Q |
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| T |
31255116 |
tagtattagaacaataacttacacgtcgatgttctttttccaagcaggcaccgatccagtgagaaggtttccagttaaaaatctatcataaaagtatatc |
31255215 |
T |
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| Q |
114 |
aagatattaatatgcaaagcttaatagttattgaggtgaacacaattggaaataagctaatcacaaccaattatctcttc |
193 |
Q |
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| T |
31255216 |
aagatattaatatgcaaagcttaatatttattgaggtgaaaattaatggaaataagctaatcacacccatttttctcttc |
31255295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 31281330 - 31281457
Alignment:
| Q |
28 |
taacttacacgtcaacgttctttttccaagcaggcaccgatccagtgagaaggtttccagttaaaaatctatcataaaagtatatcaagatattaatatg |
127 |
Q |
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|||||||| ||| ||| ||| |||||| | ||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| | | |
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| T |
31281330 |
taacttactcgttaactttcggtttccaggaaggcaccaatccagtgagaaggtttccacttaaaaatctaccataaaagaatatcaagatattattttc |
31281429 |
T |
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| Q |
128 |
caaagcttaatagttattgaggtgaaca |
155 |
Q |
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| T |
31281430 |
caaagcttaatatttattgaggtgaaca |
31281457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 31419567 - 31419426
Alignment:
| Q |
2 |
aaggaatcatactagtagta---gaaaaataacttacacgtcaacgttctttttccaagcaggcaccgatccagtgagaaggtttccagttaaaaatcta |
98 |
Q |
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|||||||||| ||||||||| |||| |||||| ||||| ||||||||| |||||| |||||| | |||||| ||||||||||| |||||||||||| |
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| T |
31419567 |
aaggaatcatgctagtagtattagaaagataactcacacgctcacgttctttctccaagaaggcactggtccagtcagaaggtttccggttaaaaatcta |
31419468 |
T |
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| Q |
99 |
tcat-aaaagtatatcaagatattaatatgcaaagcttaata |
139 |
Q |
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| T |
31419467 |
ccataaaaagaatatcaagatattaatatacaaagctcaata |
31419426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 31306268 - 31306357
Alignment:
| Q |
68 |
tccagtgagaaggtttccagttaaaaatctatcataaaagtatatcaagatattaatatgcaaagct--taatagttattgaggtgaaca |
155 |
Q |
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| T |
31306268 |
tccagtgagaaggtttcctgtcaaaaatctatcataatagaatatcaagatattaatgtgcaaagcttataatatttatagaggtgaaca |
31306357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 31374287 - 31374383
Alignment:
| Q |
28 |
taacttacacgtcaacgttctttttccaagcaggcaccgatccagtgagaaggtttccagttaaaaatctatcataaaagtatatcaagatattaat |
124 |
Q |
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| T |
31374287 |
taacttacacgtaaatgttctttctccatgaaggcaccagtccagtgaggttgtttccagttaaaaatctaccataaaagaatatcaaaatattaat |
31374383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 31320736 - 31320803
Alignment:
| Q |
68 |
tccagtgagaaggtttccagttaaaaatctatcataaaagtatatcaagatattaatatgcaaagctt |
135 |
Q |
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| T |
31320736 |
tccagtgagaaggtttccggtcaagaatctatcataaaagaatatcaaggtattagtatgcaaagctt |
31320803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 31359655 - 31359722
Alignment:
| Q |
59 |
aggcaccgatccagtgagaaggtttccagttaaaaatctatcataaaagtatatcaagatattaatat |
126 |
Q |
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| T |
31359655 |
aggcactggtccagtgagtaggtttccagttaaaaatctacgacaaaagaatatcaagatattaatat |
31359722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 31386325 - 31386392
Alignment:
| Q |
68 |
tccagtgagaaggtttccagttaaaaatctatcataaaagtatatcaagatattaatatgcaaagctt |
135 |
Q |
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| T |
31386325 |
tccagtgagaaggtttccggttaaaaatctaccaaaaaagaatatcatgatattaatatacaatgctt |
31386392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 3300591 - 3300515
Alignment:
| Q |
20 |
tagaaaaataacttacacgtcaacgttctttttccaagcaggcaccgatccagtgagaaggtttccagttaaaaatc |
96 |
Q |
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| T |
3300591 |
tagaacaagaacttacacgtcgatgttctttttccaagcaggtaccgatccagtaagaaggtttccagttaaaaatc |
3300515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 38837253 - 38837177
Alignment:
| Q |
20 |
tagaaaaataacttacacgtcaacgttctttttccaagcaggcaccgatccagtgagaaggtttccagttaaaaatc |
96 |
Q |
| |
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||||| || |||||||||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
38837253 |
tagaacaagaacttacacgtcgatgttctttttccaagcaggtaccgatccagtaagaaggtttccagttaaaaatc |
38837177 |
T |
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