View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_23 (Length: 510)
Name: NF15941_low_23
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_23 |
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| [»] scaffold0087 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 322 - 496
Target Start/End: Original strand, 46206132 - 46206303
Alignment:
| Q |
322 |
aatttagatacggaggtcttgatcatatttcaattagaataaagtaccaaaaatacattttatcatcaaatatttcnnnnnnnnnnnnnnnncaagtata |
421 |
Q |
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| T |
46206132 |
aatttagatacagaggtcttaatcatatttcaattagaataaagtaccaaaagtacattttatcatcaaatatt---aaaaaaaaaaaaaaaaaagtata |
46206228 |
T |
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| Q |
422 |
ttgaaatccttcaatttgtcgggatatcttagaatctcctacaaatcaaacaaaggacacccctcgttcaccatg |
496 |
Q |
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| T |
46206229 |
ttgaaatccttcaatttgtcgggatatcttagaatctcctacaaatcaaacaaaggacacccctcgttcaccatg |
46206303 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 50824317 - 50824265
Alignment:
| Q |
229 |
ctattggtaaacagtaaaaactggacctatgaaaacgtaggtaagttttgtcc |
281 |
Q |
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| T |
50824317 |
ctattggcaaacagtaaaaactgtacctatggaaacgtaggtaagttttgtcc |
50824265 |
T |
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Target: scaffold0087 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 37488 - 37528
Alignment:
| Q |
237 |
aaacagtaaaaactggacctatgaaaacgtaggtaagtttt |
277 |
Q |
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| T |
37488 |
aaacagtaaaaattggacctattgaaacgtaggtaagtttt |
37528 |
T |
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