View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_26 (Length: 476)
Name: NF15941_low_26
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 7e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 69 - 272
Target Start/End: Complemental strand, 15527068 - 15526863
Alignment:
| Q |
69 |
cacatcctagattttttattctgcaccactctaatgtaaagactct--aaataccatggtgcaatttcgtctcatatgaaatatatttattttactgctc |
166 |
Q |
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| T |
15527068 |
cacatcctagattttttattctgcaccattctaatgtaaagactctctaaataccatggtgcaatttcgtctcatatgaaatatatttattttactgctc |
15526969 |
T |
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| Q |
167 |
tatatataagaaaaagctggatcaacaaaaaattatgcattttatataaattttgaaccacatatttgtttacgaaactttttctatggatggaattata |
266 |
Q |
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| T |
15526968 |
tatatataagaaaaagctggatcaacaaaaatttgtgcattttatataaattttgaaccatatatttgtttactaaactttttctatagatgaaattata |
15526869 |
T |
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| Q |
267 |
ttttta |
272 |
Q |
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||||| |
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| T |
15526868 |
gtttta |
15526863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 15527147 - 15527097
Alignment:
| Q |
18 |
aaaactagatagatagaacaaaaagaatcatgctgcacaccttcaattctg |
68 |
Q |
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| T |
15527147 |
aaaactagatagatagaacaaaaagaatcatgctgcacaccttcaattctg |
15527097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 15526799 - 15526746
Alignment:
| Q |
279 |
ttcaacttacttcataacgcggttaaattttttcatcattcaatcaaaaattat |
332 |
Q |
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|||||||||||||||||| || ||||| |||||||||||||||||||||||||| |
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| T |
15526799 |
ttcaacttacttcataacacgattaaactttttcatcattcaatcaaaaattat |
15526746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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