View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_27 (Length: 474)
Name: NF15941_low_27
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Original strand, 30402691 - 30403139
Alignment:
| Q |
19 |
ctaaccttataatttctcagatgctatatatgccttgtagagtataatgatggagacagcgtgcgtgttctgccttgcaatcatgaatttcatagaacat |
118 |
Q |
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| T |
30402691 |
ctaaccttataatttctcagatgctatatatgccttgtagagtataatgatggagacagcgtgcgtgttctgccttgcaatcatgaatttcatagaacat |
30402790 |
T |
|
| Q |
119 |
gcatagacaaatggttgaaggagattcagaggtatgagaaaatacatattcagatttccttcttgtttctatcactagagttacacatttgcaccatttc |
218 |
Q |
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| T |
30402791 |
gcatagacaaatggttgaaggagattcacaggtatgagaaaatagatatccagatttccttcttgtttctatcactagagttacacatttgcaccatttc |
30402890 |
T |
|
| Q |
219 |
cctccaatacagaagatctgaaacatatccatattacctgtacatacgatatgaggaaccagagatgcacgcgcatctgcataaaataacttcaaaagca |
318 |
Q |
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| T |
30402891 |
cctccaatacagaagatctgaaacatatccatattacctgtacatatgatacgaggaaccagagatgcacgcgcatctgcataaaataacttcaaaagca |
30402990 |
T |
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| Q |
319 |
aaaaatttatagcttacatattttcaatcatgggacaccaacccccttttctaacttggcaacatatttatcttgtatctctagctcttcaaatgttttc |
418 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30402991 |
aaaaatttatagcgtacatattttcaatcatgggacacctacccccttttctaacttggcaacatatttatcttgtatctctagctcttcaaatgttttc |
30403090 |
T |
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| Q |
419 |
ttatttattagcacaggatttaagattaagtatgttgagtttcatctca |
467 |
Q |
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| T |
30403091 |
ttatttattagcacagggtttaagattaagtatgttgagtttcatctca |
30403139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 10784093 - 10783967
Alignment:
| Q |
28 |
taatttctcagatgctatatatgccttgtagagtataatgatggagacagcgtgcgtgttctgccttgcaatcatgaatttcatagaacatgcatagaca |
127 |
Q |
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||||||| ||||||||||||||||||||| ||||| | |||||||||||| |||| || || ||||| ||||||||||||||| |||||| ||||||| |
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| T |
10784093 |
taatttcacagatgctatatatgccttgtggagtacgaagatggagacagcatgcgagtacttccttgtcatcatgaatttcatacaacatgtatagaca |
10783994 |
T |
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| Q |
128 |
aatggttgaaggagattcagaggtatg |
154 |
Q |
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| T |
10783993 |
agtggctgaaagaggttcacaggtatg |
10783967 |
T |
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