View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_3 (Length: 617)
Name: NF15941_low_3
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 565; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 18 - 607
Target Start/End: Original strand, 31464047 - 31464636
Alignment:
| Q |
18 |
tactaatcagtattgccttgttgtgatggaaaattgacttgaatgacggctgcaagattttggacattaaaattcatagttgcatcattttcaagttcaa |
117 |
Q |
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| T |
31464047 |
tactaatcagtattgccttgttgtgatggaaaattgacttgaatgacggctgcaagattttggacattaaaattcatagttgcatcattttcaagttcaa |
31464146 |
T |
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| Q |
118 |
cacannnnnnnaacggcaaaatatttttattaagaaaaaatggatacaagtacaaaaaatactaaacacccaagataggcatgaacaaatggaactacac |
217 |
Q |
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| T |
31464147 |
cacatttttttaacggcaaaatatttttattaagaaaaaatggatacaagtacaaaaaatactaaacacccaagataggcatgaacaaatggaactacac |
31464246 |
T |
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| Q |
218 |
ccagacagagatacgacgtaccaacacactaaacacagttatcattccaaacccctgaccactgtcctgatcaacaccacacgaaataaagggctagcag |
317 |
Q |
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| T |
31464247 |
ccagacagagatacgacgtaccaacacactaaacacagttatcattccaaacccctgaccactgtcctgatcaacaccacacgaaataaagggctagcag |
31464346 |
T |
|
| Q |
318 |
acaattgttcggatcttcatctccaacatcaactatgatggcacattcagacccttccaataatccaatcaatgagttttctaaccatcgtcttcctgtt |
417 |
Q |
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| T |
31464347 |
acaattgttcggatcttcatctccaacatcaactatgatggcacattcagacccttccaataatccaatcaatgagttttctaaccatcgtcttcctgtt |
31464446 |
T |
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| Q |
418 |
ctcgttacttggattggtttggtagaaatgtctaattggatcttccacaacacttggtgctgccgtattatttgggatgaaatgcagaattggatcactt |
517 |
Q |
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| T |
31464447 |
ctcgttacttggattggtttggtagaaatgtctaattggatcttccacaacacttggtgctgccgtattatttgggatgaaatgcagaattggatcactt |
31464546 |
T |
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| Q |
518 |
tctgcgccgttttgattgcctatagaaggttgatcttggattgggagtccacttccacccaagtaaacacgaaacatgatgagagaataa |
607 |
Q |
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| T |
31464547 |
tctgcgccgttttgattgcctatagaaggttgatcttggattgggagtccactttcacccaagtaaacacgaaacatgatgagagaataa |
31464636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 294 - 607
Target Start/End: Complemental strand, 31484408 - 31484092
Alignment:
| Q |
294 |
ccacacgaaataaagggctagcagacaattgttcggatcttcatctccaacatcaactatgatggcacattcagacccttccaataatccaatcaatgag |
393 |
Q |
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| T |
31484408 |
ccacgcgaaataaagagctagcaatcaatggtttgcatcttcatctccaacatcaactatgtttgcacattcagacccttccaataatccaatcaatgat |
31484309 |
T |
|
| Q |
394 |
ttttctaaccatcgtcttcct---gttctcgttacttggattggtttggtagaaatgtctaattggatcttccacaacacttggtgctgccgtattattt |
490 |
Q |
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| T |
31484308 |
ttttctaaccatcgtcttcttcttgttctcgttactaggattggtttggtagaaatgtctaattggatcttcttcaacacttgatgccgcggtattattt |
31484209 |
T |
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| Q |
491 |
gggatgaaatgcagaattggatcactttctgcgccgttttgattgcctatagaaggttgatcttggattgggagtccacttccacccaagtaaacacgaa |
590 |
Q |
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| T |
31484208 |
gggatgaaatgcagaattggatcactttctgcgccgttttgattgcctatggaaggttgatcttggattgggagtccgctttcacccgggtaaaaacgaa |
31484109 |
T |
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| Q |
591 |
acatgatgagagaataa |
607 |
Q |
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| T |
31484108 |
acatgatgagaaaataa |
31484092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 43 - 243
Target Start/End: Complemental strand, 31484633 - 31484434
Alignment:
| Q |
43 |
atggaaaattgacttgaatgacggctgcaagattttggacattaaaattcatagttgcatcattttcaagttcaacacannnnnnnaacggcaaaatatt |
142 |
Q |
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| T |
31484633 |
atggaaaattgacttgagtgacgcttgcaagatttcggacattagaattcatagttgcatcattttca----gcactttcttttttaacggcaaaatatt |
31484538 |
T |
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| Q |
143 |
tttattaagaaaaaatggatacaagtacaaaaaatactaaacacccaagataggcat---gaacaaatggaactacacccagacagagatacgacgtacc |
239 |
Q |
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| T |
31484537 |
tttattaagaaaaaatggataaagatacaagaaattctaaacacacaatattggaattacaaacaaatggaactacacccaccctgagatacgacgcacc |
31484438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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