View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_low_31 (Length: 465)
Name: NF15941_low_31
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_31 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 146 - 456
Target Start/End: Complemental strand, 7737689 - 7737379
Alignment:
| Q |
146 |
gaggtggaagtttcaacccacctatctaggtcggcacacatcattcgcctcgttttagacggattgattgcaagaaaggaaaaacggagacaggttgatc |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7737689 |
gaggtggaagtttcaacccacctatctaggtcggcacacatcattcgcctcgttttagacggattgattgcaagaaaggaaaaacggagacaggttgatc |
7737590 |
T |
|
| Q |
246 |
agtttttccatccctaatttcccttttaaatccttggaactcaagtaaagcttcataatcccttttaaagtaaatcatgttgaagaaattaaaatcattt |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7737589 |
agtttttccatccctaatttcccttttaaatccttggaactcaagtaaagcttcataatcccttttaaagtaaatcatgttgaagaaattaaaatcattt |
7737490 |
T |
|
| Q |
346 |
ggtattttggtagactttaaagtaataggagaaaagattggattaaatacaaaagacnnnnnnnggtagttattgggtcaaaatcattagaacaactcat |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7737489 |
ggtattttggtagactttaaagtaataggagaaaagattggatcaaatacaaaagacaaaaaaaggtagttaatgggtcaaaatcattagaacaactcat |
7737390 |
T |
|
| Q |
446 |
gtgagaataat |
456 |
Q |
| |
|
||||||||||| |
|
|
| T |
7737389 |
gtgagaataat |
7737379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 7737858 - 7737808
Alignment:
| Q |
10 |
ctttgtttgcctatgattcatggattatacatgttgaattttaatatacaa |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7737858 |
ctttgtttgcctatgattcatggattatacatgttgaattttaatatacaa |
7737808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University