View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_32 (Length: 463)
Name: NF15941_low_32
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Complemental strand, 35821366 - 35820929
Alignment:
| Q |
11 |
cataggtgtggtaaaacacgtttacgataatagttgttttaaggatattgtttaagaaatattaaa-taaaagtttggttgaaaaaataagtcaaataaa |
109 |
Q |
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| T |
35821366 |
cataggtgtggtaaaacacttttacgataacagttgttttaaggatattgtttaagaaatattaaaataaaagtttggttgaaaaaataagtcaaataaa |
35821267 |
T |
|
| Q |
110 |
ttaacaaacacattgtaattgtttaatcaataccctaaaaacattaatttttggttggattttgtttatcttcctgcctaattttggattattagacatg |
209 |
Q |
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| T |
35821266 |
ttaacaaacacattgtaattgtttaatcaataccctaaaaacattaatttttagttggattttgtttatcttcctgcctaattttggattattagacctg |
35821167 |
T |
|
| Q |
210 |
tttcccttaaaaatcaaatgattaacgcaaagaataccctaatatacatttttcttagtaagaaaattgtcttctgccgtgcaccacaccataaatatgc |
309 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35821166 |
tttcccttaaaaactgaatgattaacgcaaagaataccctaatatatatttttcttagtaagaaaattgtcttctgccgtgcaccacaccataaatatgc |
35821067 |
T |
|
| Q |
310 |
tctccttccaccannnnnnnccttgtagaagaaggttcatccagctcaagagattccatctgtgaaatttcgttatcaattcacgtgctagatattgaat |
409 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35821066 |
tctccttccaccatttttttccttgtagaagaaggttcatccagctcaagagattccatctgtgaaatttcgttatcaattcacgtgctagatattgaat |
35820967 |
T |
|
| Q |
410 |
aatcaaaacgatnnnnnnntaagtatagaccttgactt |
447 |
Q |
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|||||||||||| ||||||||||||||||||| |
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| T |
35820966 |
aatcaaaacgatgggggggtaagtatagaccttgactt |
35820929 |
T |
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