View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_34 (Length: 458)

Name: NF15941_low_34
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_34
NF15941_low_34
[»] chr1 (9 HSPs)
chr1 (172-450)||(26833089-26833367)
chr1 (181-319)||(26786432-26786570)
chr1 (17-101)||(26833438-26833522)
chr1 (188-315)||(26823309-26823436)
chr1 (188-305)||(26799228-26799345)
chr1 (18-101)||(26799425-26799508)
chr1 (17-101)||(26786649-26786733)
chr1 (18-101)||(26823517-26823600)
chr1 (201-291)||(41545969-41546059)
[»] chr7 (2 HSPs)
chr7 (201-304)||(41916992-41917095)
chr7 (20-99)||(41916813-41916892)
[»] chr6 (1 HSPs)
chr6 (56-99)||(2021636-2021679)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 172 - 450
Target Start/End: Complemental strand, 26833367 - 26833089
Alignment:
Q  172 gaaattgacatataaattgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaatt 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26833367 gaaattgacatataaattgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaatt 26833268  T
Q  272 cttgatgattcaactgatcctacaattaaggtatctatgctacaaaactaatgagaacttttgtcaccttaannnnnnnncttccatttcggttctcttg 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| ||||||||||    
T  26833267 cttgatgattcaactgatcctacaattaaggtatctatgctacaaaactaatgagaacttttgtcaccttaattttttttcttccattttggttctcttg 26833168  T
Q  372 ttacttgttagacacttcagtcatttatatcggtttttcatttccgtccatcaaatatttcctaaaatgtagaataatc 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26833167 ttacttgttagacacttcagtcatttatatcggtttttcatttccgtccatcaaatatttcctaaaatgtagaataatc 26833089  T

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Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 181 - 319
Target Start/End: Complemental strand, 26786570 - 26786432
Alignment:
Q  181 atataaattgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgat 280  Q
    ||||| || |||| ||||| ||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||    
T  26786570 atatatatggttctaaatgtaggtttatcagctatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgat 26786471  T
Q  281 tcaactgatcctacaattaaggtatctatgctacaaaac 319  Q
    |||||||| || ||||| ||||||| |||||||||||||    
T  26786470 tcaactgacccaacaatcaaggtatatatgctacaaaac 26786432  T

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Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 26833522 - 26833438
Alignment:
Q  17 actattaaggatgatgttgagttgggaaactctaattaccctatggttcttgttcaagttccaatgtataatgaaagagaggtga 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26833522 actattaaggatgatgttgagttgggaaactctaattaccctatggttcttgttcaagttccaatgtataatgaaagagaggtga 26833438  T

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Target: chr1; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 188 - 315
Target Start/End: Complemental strand, 26823436 - 26823309
Alignment:
Q  188 ttgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactg 287  Q
    ||||||| | |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| ||||    
T  26823436 ttgttcatattgcaggtttatcagttatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactg 26823337  T
Q  288 atcctacaattaaggtatctatgctaca 315  Q
    | || ||||| |||||||  ||||||||    
T  26823336 acccaacaatcaaggtatacatgctaca 26823309  T

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Target: chr1; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 188 - 305
Target Start/End: Complemental strand, 26799345 - 26799228
Alignment:
Q  188 ttgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactg 287  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| ||||    
T  26799345 ttgttcaaattgcaggtttatcagctatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactg 26799246  T
Q  288 atcctacaattaaggtat 305  Q
    | || || || |||||||    
T  26799245 acccaaccatcaaggtat 26799228  T

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Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 26799508 - 26799425
Alignment:
Q  18 ctattaaggatgatgttgagttgggaaactctaattaccctatggttcttgttcaagttccaatgtataatgaaagagaggtga 101  Q
    ||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||    
T  26799508 ctattgaggatgatgttgagttgggaaactctaattatcccatggttcttgttcaagttccaatgtacaatgaaagagaggtga 26799425  T

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Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 26786733 - 26786649
Alignment:
Q  17 actattaaggatgatgttgagttgggaaactctaattaccctatggttcttgttcaagttccaatgtataatgaaagagaggtga 101  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||    
T  26786733 actattaaggatgatgttgagttggaaaactctaattaccctattgttcttgttcaaatcccaatgtacaatgaaagagaggtga 26786649  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 26823600 - 26823517
Alignment:
Q  18 ctattaaggatgatgttgagttgggaaactctaattaccctatggttcttgttcaagttccaatgtataatgaaagagaggtga 101  Q
    ||||| |||||||||||||||||||||||||  |||| || ||||||||||| ||  | |||||||| ||||||||||||||||    
T  26823600 ctattgaggatgatgttgagttgggaaactcctattatcccatggttcttgtccagatcccaatgtacaatgaaagagaggtga 26823517  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 291
Target Start/End: Original strand, 41545969 - 41546059
Alignment:
Q  201 aggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactgatcc 291  Q
    |||| ||||| ||||||||||| |||||||||||  | |||||||| |||||||| || || || ||| |||||||||| ||||| |||||    
T  41545969 aggtgtatcaattatcaattggagctgcatgtgggttatcatggccatctgatagaattattattcaagttcttgatgactcaacagatcc 41546059  T

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Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 41916992 - 41917095
Alignment:
Q  201 aggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactgatcctacaattaa 300  Q
    |||||||||| || |||||||| ||||||||||| || ||||||||||||||||||||||| |||||| |||||||||| || ||||| || ||||| ||    
T  41916992 aggtttatcaattgtcaattggagctgcatgtggtctttcatggccttctgataggatcattatacaagttcttgatgactccactgacccaacaatcaa 41917091  T
Q  301 ggta 304  Q
    ||||    
T  41917092 ggta 41917095  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 41916813 - 41916892
Alignment:
Q  20 attaaggatgatgttgagttgggaaactctaattaccctatggttcttgttcaagttccaatgtataatgaaagagaggt 99  Q
    |||||||||||| ||||||| || ||||||  ||| |||||||||||||||||| | || ||||| ||||||||||||||    
T  41916813 attaaggatgatattgagttagggaactcttgttatcctatggttcttgttcaaatacctatgtacaatgaaagagaggt 41916892  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 2021636 - 2021679
Alignment:
Q  56 cctatggttcttgttcaagttccaatgtataatgaaagagaggt 99  Q
    |||||||||||||||||  ||||||||| |||||||||||||||    
T  2021636 cctatggttcttgttcagattccaatgtgtaatgaaagagaggt 2021679  T

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