View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_36 (Length: 453)
Name: NF15941_low_36
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 153 - 315
Target Start/End: Original strand, 4015586 - 4015748
Alignment:
| Q |
153 |
gaaggaatggttttggaatacacgatgtatagggtgtctaacgatgctgaattcttccttatgttcaacgtgatatcccggaatacagattgtgttcttc |
252 |
Q |
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| T |
4015586 |
gaaggaatggttttggaatacacgatgtatagggtgtctaacgatgctgaattcttccttatgttcaacgtgatatcccggaatacagattgtgttcttc |
4015685 |
T |
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| Q |
253 |
gtgattattgttaagagcgaagggtttcgtgtctgtgatcgtgaattatggaggtgcaatttc |
315 |
Q |
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| T |
4015686 |
gtgattatttttaagagcgaagagtttcgtgtctgtgatcgtgaattatgaaggtgcaatttc |
4015748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 312 - 423
Target Start/End: Original strand, 4015775 - 4015886
Alignment:
| Q |
312 |
tttccaagacttactcacacacctgaatcggacaagagatcccactggaagaaatgaaagtacctcaaagatgagttcgtcggggaggaacgctggtgac |
411 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4015775 |
tttccaagacttactcacacacctgaatcgaacaagagatctcactggaagaaatgaaagtacctcaaagatgagttcgtcggggaggaacgctggtgac |
4015874 |
T |
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| Q |
412 |
agagtcatcatc |
423 |
Q |
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| T |
4015875 |
agagtcttcatc |
4015886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 4015439 - 4015520
Alignment:
| Q |
66 |
aacacagagccagtactcaaaaccataaacagttttagaaacaacttccaaaagaagcaatccattacaggaatcaactatc |
147 |
Q |
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| T |
4015439 |
aacacagagccagtactcaaaaccataaacagtttcagaaacaacttccaaaagaagcaatccattacaggaatcaactatc |
4015520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 312 - 420
Target Start/End: Original strand, 4017593 - 4017701
Alignment:
| Q |
312 |
tttccaagacttactcacacacctgaatcggacaagagatcccactggaagaaatgaaagtacctcaaagatgagttcgtcggggaggaacgctggtgac |
411 |
Q |
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||||||||| |||||||||||||| ||| ||| ||||||| ||| |||||||| ||||||||||| | |||||| || |||| ||||| ||| |||||| |
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| T |
4017593 |
tttccaagatttactcacacacctaaattggagaagagatttcacgggaagaaacgaaagtacctcgacgatgagatcctcggagaggaccgccggtgac |
4017692 |
T |
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| Q |
412 |
agagtcatc |
420 |
Q |
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| T |
4017693 |
agagtcatc |
4017701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 10218221 - 10218156
Alignment:
| Q |
312 |
tttccaagacttactcacacacctgaatcggacaagagatcccactggaagaaatgaaagtacctc |
377 |
Q |
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| T |
10218221 |
tttccaagatttactcacacacctgaagcaaacaagagatttcaccggaagaaaggaaagtacctc |
10218156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 21897357 - 21897422
Alignment:
| Q |
312 |
tttccaagacttactcacacacctgaatcggacaagagatcccactggaagaaatgaaagtacctc |
377 |
Q |
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| T |
21897357 |
tttccaacacttacttacagacctgaatcgaataagagatctaacaggaagaaacgaaagtacctc |
21897422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 402
Target Start/End: Original strand, 29922935 - 29923025
Alignment:
| Q |
312 |
tttccaagacttactcacacacctgaatcggacaagagatcccactggaagaaatgaaagtacctcaaagatgagttcgtcggggaggaac |
402 |
Q |
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| T |
29922935 |
tttccaagacttactaacactcttgaatcgaagaagaggtttcaccggaagaaaggaaagtacttcagcgatgagatcgtcgaggaggaac |
29923025 |
T |
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