View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_37 (Length: 452)

Name: NF15941_low_37
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_37
NF15941_low_37
[»] chr3 (20 HSPs)
chr3 (10-437)||(4595253-4595681)
chr3 (46-437)||(4661592-4661972)
chr3 (46-347)||(4697999-4698296)
chr3 (49-348)||(4648885-4649178)
chr3 (49-221)||(4767019-4767190)
chr3 (51-437)||(4780237-4780614)
chr3 (95-437)||(4667530-4667860)
chr3 (49-364)||(4774984-4775294)
chr3 (308-437)||(4697866-4697989)
chr3 (308-362)||(4648822-4648876)
chr3 (308-437)||(4766780-4766903)
chr3 (10-43)||(7680322-7680355)
chr3 (10-43)||(36231751-36231784)
chr3 (10-43)||(48585580-48585613)
chr3 (15-44)||(48598595-48598624)
chr3 (15-44)||(52343733-52343762)
chr3 (15-43)||(28412207-28412235)
chr3 (10-42)||(44353488-44353520)
chr3 (10-42)||(52813883-52813915)
chr3 (15-43)||(54557042-54557070)
[»] chr4 (7 HSPs)
chr4 (15-48)||(40431204-40431237)
chr4 (15-52)||(50469959-50469996)
chr4 (15-46)||(20292485-20292516)
chr4 (17-46)||(7319096-7319125)
chr4 (15-48)||(37829829-37829862)
chr4 (10-42)||(24035420-24035452)
chr4 (15-43)||(34160290-34160318)
[»] scaffold0007 (1 HSPs)
scaffold0007 (10-45)||(200781-200816)
[»] chr8 (5 HSPs)
chr8 (15-46)||(4006668-4006699)
chr8 (15-44)||(36056820-36056849)
chr8 (10-43)||(38946694-38946727)
chr8 (15-44)||(42687049-42687078)
chr8 (10-42)||(38459208-38459240)
[»] chr7 (5 HSPs)
chr7 (15-46)||(10594962-10594993)
chr7 (15-46)||(47541252-47541283)
chr7 (15-45)||(20493652-20493682)
chr7 (10-42)||(36687916-36687948)
chr7 (15-43)||(39596930-39596958)
[»] chr6 (2 HSPs)
chr6 (15-46)||(29622569-29622600)
chr6 (10-42)||(8526101-8526133)
[»] chr1 (9 HSPs)
chr1 (10-45)||(48934189-48934224)
chr1 (15-45)||(8113024-8113054)
chr1 (15-45)||(19247064-19247094)
chr1 (15-45)||(51001183-51001213)
chr1 (15-44)||(9639896-9639925)
chr1 (15-44)||(17702891-17702920)
chr1 (15-44)||(29921039-29921068)
chr1 (15-43)||(13074005-13074033)
chr1 (15-43)||(17475278-17475306)
[»] chr5 (12 HSPs)
chr5 (15-44)||(4622119-4622148)
chr5 (15-44)||(10665283-10665312)
chr5 (15-44)||(15271804-15271833)
chr5 (15-44)||(18979401-18979430)
chr5 (15-44)||(37273920-37273949)
chr5 (15-44)||(37341768-37341797)
chr5 (15-44)||(40740096-40740125)
chr5 (10-46)||(6246182-6246218)
chr5 (10-42)||(18865498-18865530)
chr5 (10-42)||(38769224-38769256)
chr5 (15-43)||(41881002-41881030)
chr5 (15-43)||(42436454-42436482)
[»] chr2 (2 HSPs)
chr2 (15-43)||(4072563-4072591)
chr2 (15-47)||(38628234-38628266)


Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 10 - 437
Target Start/End: Complemental strand, 4595681 - 4595253
Alignment:
Q  10 ccaagaatatatagggtgtgaatagaaaaactcttaaacttatgcattattatttttaaaatttcccctttcgatcatctaaagtaataaggttaattaa 109  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4595681 ccaaaaatatatagggtgtgaatacaaaaactcttaaacttatgcattattatttttaaaatttcccctttcgatcatctaaagtaataaggttaattaa 4595582  T
Q  110 caaaatattaatttctaatgattagcaagctttttacggtacacatttattaagtgtggtaaatgaaaaaatataacacattgatcttcttaaaagacag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4595581 caaaatattaatttctaatgattagcaagctttttacggtacacatttattaagtgtggtaaatgaaaaaatataacacattgatcttcttaaaagacag 4595482  T
Q  210 ttaataataatttttaaatttgggaggggagg-ggggcttttaaaagtgcttaagaggtaaaagtatttacatatttcttaacacaccatgaagtttata 308  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4595481 ttaataataatttttaaatttgggaggggagggggggcttttaaaagtgcttaagaggtaaaagtatttacatatttcttaacacaccatgaagtttata 4595382  T
Q  309 ctataaagtgatcgaataaattatatttgttgcatgtaaaaagagaaagatatggccactagttataagtttgtgtatgccataannnnnnnnattttcc 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||    
T  4595381 ctataaagtgatcgaataaattatatttgttgcatgtaaaaagagaaagatatggccattagttataagtttgtgtatgccataattttttttattttcc 4595282  T
Q  409 tatttcttgttgcaaataatgttgagggt 437  Q
    |||||||||||||||||||||||||||||    
T  4595281 tatttcttgttgcaaataatgttgagggt 4595253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 46 - 437
Target Start/End: Complemental strand, 4661972 - 4661592
Alignment:
Q  46 aacttatgcattattatttttaaaa-tttcccctttcgatcatctaaagtaataaggttaattaacaaaatattaatttctaatgattagcaagcttttt 144  Q
    |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||  ||||||| ||||||||||| ||||||||||||||||| |||||    
T  4661972 aacttatgcattattattttcaaaaatttcccctttcgatcatcaaaagtaataaatttaattaccaaaatattaaattctaatgattagcaagtttttt 4661873  T
Q  145 acggtacacatttattaagtgtggtaaatgaaaaaatataacacattgatcttcttaaaagacagttaataataatttttaaatttgggaggggaggggg 244  Q
    ||||| ||||| |||||||| ||||||||  | ||||||||||||||||||||||||| ||||| |||||||||||||| || || ||||       | |    
T  4661872 acggtgcacatatattaagtatggtaaattgacaaatataacacattgatcttcttaagagacacttaataataattttaaatttaggga-------gtg 4661780  T
Q  245 gcttttaaaagtgcttaagaggtaaaagtatttacatatttcttaacacaccatgaagtttata--ctataaagtgatcgaataaattatatttgttgca 342  Q
     |||||||||||  ||||||||||||| ||||||||| |||||||||||| ||||| |||| ||  ||||||||||||| |||||||||||||||||| |    
T  4661779 acttttaaaagttattaagaggtaaaaatatttacatttttcttaacacaacatgaggtttgtaccctataaagtgatcaaataaattatatttgttgta 4661680  T
Q  343 tgtaaaaagagaaagatatggccactagttataagtttgtgtatgccataannnnnnnnattttcctatttcttgttgcaaataatgttgagggt 437  Q
    |||||| ||| |||||||||||      | ||||  |||||||| | ||||        ||||||||||| ||||||||||||||||||||||||    
T  4661679 tgtaaagaga-aaagatatggc------tcataaacttgtgtatactataattttatttattttcctattccttgttgcaaataatgttgagggt 4661592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 46 - 347
Target Start/End: Complemental strand, 4698296 - 4697999
Alignment:
Q  46 aacttatgcattattat-ttttaaaatttcccctttcgatcatctaaagtaataaggttaattaacaaaatattaatttctaatgattagcaagcttttt 144  Q
    |||||||||||| |||| |||| |||| ||   |||| |||||| ||||||||||||||||||| ||||||||||| ||||||||||||| ||| |||||    
T  4698296 aacttatgcatttttatgtttttaaatgtcttttttcaatcatcaaaagtaataaggttaattaccaaaatattaaattctaatgattagaaagattttt 4698197  T
Q  145 acggtacacatttattaagtgtggtaaatgaaaaaatataacacattgatcttcttaaaagacagttaataataatttttaaatttgggaggggaggggg 244  Q
    | ||| | |||||||||||||| ||||||| | ||||||||||||||||||||||||| ||||| |||||||||||||| || || ||||       |      
T  4698196 atggtgcgcatttattaagtgttgtaaatggacaaatataacacattgatcttcttaagagacaattaataataattttaaatttaggga-------gta 4698104  T
Q  245 gcttttaaaagtgcttaagaggtaaaagtatttacatatttcttaacacaccatgaagtttata--ctataaagtgatcgaataaattatatttgttgca 342  Q
     |||||||||||  ||||| || |||| |||||| |  ||||||||| || ||||| |||||||  | ||||||||||| |||||||||||||||||| |    
T  4698103 acttttaaaagttattaagcggaaaaaatatttaaaattttcttaacccaacatgaggtttatacccaataaagtgatcaaataaattatatttgttgta 4698004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 49 - 348
Target Start/End: Complemental strand, 4649178 - 4648885
Alignment:
Q  49 ttatgcattattatttttaaaatttcccctttcgatcatctaaagtaataaggttaattaacaaaatattaatttctaatgattagcaagctttttacgg 148  Q
    |||||||||||||||||| ||| |||||||||| |||||| |||||||||||||||| || ||||||||||| || |||||||||||||| ||||||       
T  4649178 ttatgcattattattttttaaagttcccctttcaatcatcaaaagtaataaggttaactaccaaaatattaaattgtaatgattagcaagttttttattt 4649079  T
Q  149 tacacatttattaagtgtggtaaatgaaaaaatataacacattgatcttcttaaaagacagttaataataatttttaaatttgggaggggaggggggctt 248  Q
    ||  | |||||||||||||||||||| || ||||| ||||||| |||||||||| ||||| |||||||||||| | || || ||||       | | |||    
T  4649078 tatgcctttattaagtgtggtaaatg-aataatattacacattcatcttcttaagagacacttaataataattctaaatttaggga-------gagactt 4648987  T
Q  249 ttaaaagtgcttaagaggtaaaagtatttacatatttcttaacacaccatgaagtttata--ctataaagtgatcgaataaattatatttgttgcatgta 346  Q
    |||||||| |||||||||||||| || ||| || ||||| |||||| | ||| |||||||  ||||||||| ||| | |||||| ||||||||| |||||    
T  4648986 ttaaaagttcttaagaggtaaaaataattatatttttctcaacacagcgtgaggtttataccctataaagtaatcaattaaattgtatttgttgaatgta 4648887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 49 - 221
Target Start/End: Complemental strand, 4767190 - 4767019
Alignment:
Q  49 ttatgcattattatttttaaaatttcccctttcgatcatctaaagtaataaggttaattaacaaaatattaatttctaatgattagcaagctttttacgg 148  Q
    |||||||||||||||||| ||||||| |||| |||||||  |||||| |||||||||||| ||||||||||| ||||||||||||||||| ||||||| |    
T  4767190 ttatgcattattattttttaaatttcgccttccgatcatgaaaagtagtaaggttaattaccaaaatattaaattctaatgattagcaagttttttacag 4767091  T
Q  149 tacacatttattaagtgtggtaaatgaaaaaatataacacattgatcttcttaaaagacagttaataataatt 221  Q
    ||||| ||||||||||||| ||||||  | |||||||||||||| ||||||||| ||||| ||||||||||||    
T  4767090 tacacctttattaagtgtgttaaatg-gataatataacacattgttcttcttaagagacacttaataataatt 4767019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 51 - 437
Target Start/End: Complemental strand, 4780614 - 4780237
Alignment:
Q  51 atgcattattatttttaaaatttcccctttcgatcatctaaagtaataaggttaattaacaaaatattaatttctaatgattagcaagctttttacggta 150  Q
    |||||||||||||| | ||||| ||||||||||| ||| |||||||||| |||||||| ||||||||| | | ||||||||| | ||| | |||||| ||    
T  4780614 atgcattattatttattaaattacccctttcgataatccaaagtaataaagttaattaccaaaatattgaatactaatgatttggaaggtatttacgtta 4780515  T
Q  151 cacatttattaagtgtggtaaatgaaaaaatataacacattgatcttcttaaaagacagttaataataatttttaaatttgggaggggaggggggctttt 250  Q
    |||  ||||||||||| ||||||| | |||| ||||||||| |||   | || ||||| |||| |||| || | || || |||||||         ||||    
T  4780514 caccattattaagtgtagtaaatggacaaatttaacacattaatcaaatcaagagacacttaacaatagttctaaatttagggaggga--------tttt 4780423  T
Q  251 aaaagtgcttaagaggtaaaagtatttacatatttcttaacacaccatgaagtttatac--tataaagtgatcgaataaattatatttgttgcatgtaaa 348  Q
    || | |||||||||||||||| |||||| || ||||||||||||| |  || |||||||  |||||||||||| ||||||||||||||||||||||||||    
T  4780422 aataatgcttaagaggtaaaaatatttatatttttcttaacacacgaataactttatacactataaagtgatcaaataaattatatttgttgcatgtaaa 4780323  T
Q  349 aagagaaagatatggccactagttataagtttgtgtatgccataannnnnnnnattttcctatttcttgttgcaaataatgttgagggt 437  Q
    |||||| | ||||||| | || | ||||| ||||||   | || |        ||||| ||||||||||||||||||||||||||||||    
T  4780322 aagagagaaatatggctaatactcataagcttgtgt---ctatgattttattcatttttctatttcttgttgcaaataatgttgagggt 4780237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 95 - 437
Target Start/End: Complemental strand, 4667860 - 4667530
Alignment:
Q  95 aataaggttaattaacaaaatattaatttctaatgattagcaagctttttacggtacacatttattaagtgtggtaaatgaaaaaatataacacattgat 194  Q
    |||||||||||||| | ||||||||| ||||||||||||||||| |||||| ||| | | ||||||||||||| |||||| | |||||||||||||||||    
T  4667860 aataaggttaattaccgaaatattaaattctaatgattagcaagttttttatggtgcgcctttattaagtgtgataaatggacaaatataacacattgat 4667761  T
Q  195 cttcttaaaagacagttaataataatttttaaatttgggaggggaggggggcttttaaaagtgcttaagaggtaaaagtatttacatatttcttaacaca 294  Q
    |||||||| ||||| |||||||||| ||||||||||   |||| |    |  ||||||||||  ||| || |||||| || |||||| |||||||| |||    
T  4667760 cttcttaagagacacttaataataa-ttttaaattt---agggaa---tgctttttaaaagttattaggacgtaaaaatagttacatttttcttaa-aca 4667669  T
Q  295 cca--tgaagtttata--ctataaagtgatcgaataaattatatttgttgcatgtaaaaagagaaagatatggccactagttataagtttgtgtatgcca 390  Q
      |  | || ||||||  ||||||||||||| |||||||||||||||||| ||||  |||||||||||||||      | | ||||| |||||||||| |    
T  4667668 tgaggttaaatttataccctataaagtgatcaaataaattatatttgttgtatgt--aaagagaaagatatg------actcataagcttgtgtatgcta 4667577  T
Q  391 taannnnnnnnattttcctatttcttgttgcaaataatgttgagggt 437  Q
    |||        ||||| ||||||||||||||||||||||||||||||    
T  4667576 taattttatttatttttctatttcttgttgcaaataatgttgagggt 4667530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 49 - 364
Target Start/End: Complemental strand, 4775294 - 4774984
Alignment:
Q  49 ttatgcattattatttttaaaatttcccctttcgatcatctaaagtaataaggttaattaacaaaatattaatttctaatgattagcaagctttttacgg 148  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||||||| |||||||| |||||||||   | ||||||||| ||||| |||||| |     
T  4775294 ttatgcattattatttattaaatttcccctttcgatgatctaaagtaataaagttaattaccaaaatattggatactaatgatttgcaaggtttttaggt 4775195  T
Q  149 tacacatttattaagtgtggtaaatgaaaaaatataacacattgatcttcttaaaagacagttaataataatttttaaatttgggaggggaggggggctt 248  Q
    |||||  || |||||||| ||||||| | |||||||||||||| |||  || || || || |||||||| | || |||||||   | || |    |  ||    
T  4775194 tacaccattcttaagtgtagtaaatggacaaatataacacattaatcaactcaagagtcacttaataat-agttctaaattt---atggaa---agattt 4775102  T
Q  249 ttaaaagtgcttaagaggtaaaagtatttacatatttcttaacacaccatgaagtttat--actataaagtgatcgaataaattatatttgttgcatgta 346  Q
    ||||   |||||| ||||||||| |||||| || ||||||||||| | |  || |||||  |||||||||||||| ||||||||||||||||||||||||    
T  4775101 ttaatcatgcttacgaggtaaaaatatttatatttttcttaacacgcgaataactttatacactataaagtgatcaaataaattatatttgttgcatgta 4775002  T
Q  347 aaaagagaaagatatggc 364  Q
    |||||||| | |||||||    
T  4775001 aaaagagagaaatatggc 4774984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 308 - 437
Target Start/End: Complemental strand, 4697989 - 4697866
Alignment:
Q  308 actataaagtgatcgaataaattatatttgttgcatgtaaaaagagaaagatatggccactagttataagtttgtgtatgccataannnnnnnnattttc 407  Q
    |||||||||||||| ||| |||||||||||||| ||||||| || ||||||||||||      | ||||| |||||||||| ||||        ||||||    
T  4697989 actataaagtgatcaaatcaattatatttgttgtatgtaaagagtgaaagatatggc------tcataagcttgtgtatgctataactttatttattttc 4697896  T
Q  408 ctatttcttgttgcaaataatgttgagggt 437  Q
    ||||||||| | ||||||||| ||||||||    
T  4697895 ctatttcttatcgcaaataatattgagggt 4697866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 362
Target Start/End: Complemental strand, 4648876 - 4648822
Alignment:
Q  308 actataaagtgatcgaataaattatatttgttgcatgtaaaaagagaaagatatg 362  Q
    |||||||||||||| |||||||||||||||||| ||||| | ||| |||||||||    
T  4648876 actataaagtgatcaaataaattatatttgttgtatgtatagagacaaagatatg 4648822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 437
Target Start/End: Complemental strand, 4766903 - 4766780
Alignment:
Q  308 actataaagtgatcgaataaattatatttgttgcatgtaaaaagagaaagatatggccactagttataagtttgtgtatgccataannnnnnnnattttc 407  Q
    |||||||||||||  |||||||| ||||||||  ||||||| |||||||||||||||      | |||||||||||||||| ||||        || |||    
T  4766903 actataaagtgataaaataaattgtatttgttttatgtaaagagagaaagatatggc------tcataagtttgtgtatgctataattttattcatcttc 4766810  T
Q  408 ctatttcttgttgcaaataatgttgagggt 437  Q
    |||||||||||||| || |||||| |||||    
T  4766809 ctatttcttgttgctaaaaatgttaagggt 4766780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 7680355 - 7680322
Alignment:
Q  10 ccaagaatatatagggtgtgaatagaaaaactct 43  Q
    |||| |||||||||||||||||||||||||||||    
T  7680355 ccaaaaatatatagggtgtgaatagaaaaactct 7680322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 36231784 - 36231751
Alignment:
Q  10 ccaagaatatatagggtgtgaatagaaaaactct 43  Q
    |||| |||||||||||||||||||||||||||||    
T  36231784 ccaaaaatatatagggtgtgaatagaaaaactct 36231751  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 48585580 - 48585613
Alignment:
Q  10 ccaagaatatatagggtgtgaatagaaaaactct 43  Q
    |||| |||||||||||||||||||||||||||||    
T  48585580 ccaaaaatatatagggtgtgaatagaaaaactct 48585613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 48598624 - 48598595
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactctt 44  Q
    ||||||||||||||||||||||||||||||    
T  48598624 aatatatagggtgtgaatagaaaaactctt 48598595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 52343733 - 52343762
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactctt 44  Q
    ||||||||||||||||||||||||||||||    
T  52343733 aatatatagggtgtgaatagaaaaactctt 52343762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 28412207 - 28412235
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactct 43  Q
    |||||||||||||||||||||||||||||    
T  28412207 aatatatagggtgtgaatagaaaaactct 28412235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 44353520 - 44353488
Alignment:
Q  10 ccaagaatatatagggtgtgaatagaaaaactc 42  Q
    |||| ||||||||||||||||||||||||||||    
T  44353520 ccaaaaatatatagggtgtgaatagaaaaactc 44353488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 52813883 - 52813915
Alignment:
Q  10 ccaagaatatatagggtgtgaatagaaaaactc 42  Q
    |||| ||||||||||||||||||||||||||||    
T  52813883 ccaaaaatatatagggtgtgaatagaaaaactc 52813915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 54557042 - 54557070
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactct 43  Q
    |||||||||||||||||||||||||||||    
T  54557042 aatatatagggtgtgaatagaaaaactct 54557070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 40431204 - 40431237
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactcttaaac 48  Q
    ||||||||||||||||||||||||||||||||||    
T  40431204 aatatatagggtgtgaatagaaaaactcttaaac 40431237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 50469959 - 50469996
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactcttaaacttat 52  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  50469959 aatatatagggtgtgaatagaaaaactcttaaatttat 50469996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 20292516 - 20292485
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactcttaa 46  Q
    ||||||||||||||||||||||||||||||||    
T  20292516 aatatatagggtgtgaatagaaaaactcttaa 20292485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 7319096 - 7319125
Alignment:
Q  17 tatatagggtgtgaatagaaaaactcttaa 46  Q
    ||||||||||||||||||||||||||||||    
T  7319096 tatatagggtgtgaatagaaaaactcttaa 7319125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 37829829 - 37829862
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactcttaaac 48  Q
    |||||||||||||||||||||||||||| |||||    
T  37829829 aatatatagggtgtgaatagaaaaactcataaac 37829862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 24035420 - 24035452
Alignment:
Q  10 ccaagaatatatagggtgtgaatagaaaaactc 42  Q
    |||| ||||||||||||||||||||||||||||    
T  24035420 ccaaaaatatatagggtgtgaatagaaaaactc 24035452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 34160290 - 34160318
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactct 43  Q
    |||||||||||||||||||||||||||||    
T  34160290 aatatatagggtgtgaatagaaaaactct 34160318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 200781 - 200816
Alignment:
Q  10 ccaagaatatatagggtgtgaatagaaaaactctta 45  Q
    |||| |||||||||||||||||||||||||||||||    
T  200781 ccaaaaatatatagggtgtgaatagaaaaactctta 200816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 4006668 - 4006699
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactcttaa 46  Q
    ||||||||||||||||||||||||||||||||    
T  4006668 aatatatagggtgtgaatagaaaaactcttaa 4006699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 36056849 - 36056820
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactctt 44  Q
    ||||||||||||||||||||||||||||||    
T  36056849 aatatatagggtgtgaatagaaaaactctt 36056820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 38946694 - 38946727
Alignment:
Q  10 ccaagaatatatagggtgtgaatagaaaaactct 43  Q
    |||| |||||||||||||||||||||||||||||    
T  38946694 ccaaaaatatatagggtgtgaatagaaaaactct 38946727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 42687078 - 42687049
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactctt 44  Q
    ||||||||||||||||||||||||||||||    
T  42687078 aatatatagggtgtgaatagaaaaactctt 42687049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 38459240 - 38459208
Alignment:
Q  10 ccaagaatatatagggtgtgaatagaaaaactc 42  Q
    |||| ||||||||||||||||||||||||||||    
T  38459240 ccaaaaatatatagggtgtgaatagaaaaactc 38459208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 10594962 - 10594993
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactcttaa 46  Q
    ||||||||||||||||||||||||||||||||    
T  10594962 aatatatagggtgtgaatagaaaaactcttaa 10594993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 47541252 - 47541283
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactcttaa 46  Q
    ||||||||||||||||||||||||||||||||    
T  47541252 aatatatagggtgtgaatagaaaaactcttaa 47541283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 20493652 - 20493682
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactctta 45  Q
    |||||||||||||||||||||||||||||||    
T  20493652 aatatatagggtgtgaatagaaaaactctta 20493682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 36687948 - 36687916
Alignment:
Q  10 ccaagaatatatagggtgtgaatagaaaaactc 42  Q
    |||| ||||||||||||||||||||||||||||    
T  36687948 ccaaaaatatatagggtgtgaatagaaaaactc 36687916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 39596958 - 39596930
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactct 43  Q
    |||||||||||||||||||||||||||||    
T  39596958 aatatatagggtgtgaatagaaaaactct 39596930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 29622600 - 29622569
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactcttaa 46  Q
    ||||||||||||||||||||||||||||||||    
T  29622600 aatatatagggtgtgaatagaaaaactcttaa 29622569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 8526101 - 8526133
Alignment:
Q  10 ccaagaatatatagggtgtgaatagaaaaactc 42  Q
    |||| ||||||||||||||||||||||||||||    
T  8526101 ccaaaaatatatagggtgtgaatagaaaaactc 8526133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 48934189 - 48934224
Alignment:
Q  10 ccaagaatatatagggtgtgaatagaaaaactctta 45  Q
    |||| |||||||||||||||||||||||||||||||    
T  48934189 ccaaaaatatatagggtgtgaatagaaaaactctta 48934224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 8113054 - 8113024
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactctta 45  Q
    |||||||||||||||||||||||||||||||    
T  8113054 aatatatagggtgtgaatagaaaaactctta 8113024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 19247094 - 19247064
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactctta 45  Q
    |||||||||||||||||||||||||||||||    
T  19247094 aatatatagggtgtgaatagaaaaactctta 19247064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 51001213 - 51001183
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactctta 45  Q
    |||||||||||||||||||||||||||||||    
T  51001213 aatatatagggtgtgaatagaaaaactctta 51001183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 9639925 - 9639896
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactctt 44  Q
    ||||||||||||||||||||||||||||||    
T  9639925 aatatatagggtgtgaatagaaaaactctt 9639896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 17702891 - 17702920
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactctt 44  Q
    ||||||||||||||||||||||||||||||    
T  17702891 aatatatagggtgtgaatagaaaaactctt 17702920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 29921068 - 29921039
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactctt 44  Q
    ||||||||||||||||||||||||||||||    
T  29921068 aatatatagggtgtgaatagaaaaactctt 29921039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 13074005 - 13074033
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactct 43  Q
    |||||||||||||||||||||||||||||    
T  13074005 aatatatagggtgtgaatagaaaaactct 13074033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 17475278 - 17475306
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactct 43  Q
    |||||||||||||||||||||||||||||    
T  17475278 aatatatagggtgtgaatagaaaaactct 17475306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 4622119 - 4622148
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactctt 44  Q
    ||||||||||||||||||||||||||||||    
T  4622119 aatatatagggtgtgaatagaaaaactctt 4622148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 10665312 - 10665283
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactctt 44  Q
    ||||||||||||||||||||||||||||||    
T  10665312 aatatatagggtgtgaatagaaaaactctt 10665283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 15271833 - 15271804
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactctt 44  Q
    ||||||||||||||||||||||||||||||    
T  15271833 aatatatagggtgtgaatagaaaaactctt 15271804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 18979401 - 18979430
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactctt 44  Q
    ||||||||||||||||||||||||||||||    
T  18979401 aatatatagggtgtgaatagaaaaactctt 18979430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 37273949 - 37273920
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactctt 44  Q
    ||||||||||||||||||||||||||||||    
T  37273949 aatatatagggtgtgaatagaaaaactctt 37273920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 37341768 - 37341797
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactctt 44  Q
    ||||||||||||||||||||||||||||||    
T  37341768 aatatatagggtgtgaatagaaaaactctt 37341797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 40740096 - 40740125
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactctt 44  Q
    ||||||||||||||||||||||||||||||    
T  40740096 aatatatagggtgtgaatagaaaaactctt 40740125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 6246182 - 6246218
Alignment:
Q  10 ccaagaatatatagggtgtgaatagaaaaactcttaa 46  Q
    |||| |||||||| |||||||||||||||||||||||    
T  6246182 ccaaaaatatataaggtgtgaatagaaaaactcttaa 6246218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 18865498 - 18865530
Alignment:
Q  10 ccaagaatatatagggtgtgaatagaaaaactc 42  Q
    |||| ||||||||||||||||||||||||||||    
T  18865498 ccaaaaatatatagggtgtgaatagaaaaactc 18865530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 38769224 - 38769256
Alignment:
Q  10 ccaagaatatatagggtgtgaatagaaaaactc 42  Q
    |||| ||||||||||||||||||||||||||||    
T  38769224 ccaaaaatatatagggtgtgaatagaaaaactc 38769256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 41881030 - 41881002
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactct 43  Q
    |||||||||||||||||||||||||||||    
T  41881030 aatatatagggtgtgaatagaaaaactct 41881002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 42436482 - 42436454
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactct 43  Q
    |||||||||||||||||||||||||||||    
T  42436482 aatatatagggtgtgaatagaaaaactct 42436454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 4072591 - 4072563
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactct 43  Q
    |||||||||||||||||||||||||||||    
T  4072591 aatatatagggtgtgaatagaaaaactct 4072563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 38628266 - 38628234
Alignment:
Q  15 aatatatagggtgtgaatagaaaaactcttaaa 47  Q
    |||||||| ||||||||||||||||||||||||    
T  38628266 aatatatatggtgtgaatagaaaaactcttaaa 38628234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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