View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_39 (Length: 450)

Name: NF15941_low_39
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_39
NF15941_low_39
[»] chr2 (3 HSPs)
chr2 (10-435)||(8020563-8020988)
chr2 (286-363)||(22965011-22965088)
chr2 (286-363)||(22399511-22399588)
[»] chr3 (33 HSPs)
chr3 (21-206)||(28151610-28151795)
chr3 (286-435)||(28150880-28151026)
chr3 (291-435)||(28003129-28003270)
chr3 (336-435)||(27979439-27979538)
chr3 (21-145)||(17744491-17744615)
chr3 (21-145)||(19045811-19045935)
chr3 (21-192)||(28037413-28037584)
chr3 (21-191)||(11420963-11421133)
chr3 (21-163)||(28149970-28150112)
chr3 (337-435)||(27919319-27919414)
chr3 (199-287)||(28151276-28151364)
chr3 (21-146)||(27954347-27954471)
chr3 (68-164)||(27458885-27458981)
chr3 (21-117)||(28161925-28162021)
chr3 (27-146)||(8539262-8539381)
chr3 (21-117)||(28185968-28186064)
chr3 (294-435)||(27459906-27460044)
chr3 (21-146)||(27920262-27920389)
chr3 (54-163)||(27776525-27776634)
chr3 (305-434)||(11419949-11420075)
chr3 (368-435)||(17745559-17745626)
chr3 (368-435)||(19046879-19046946)
chr3 (367-432)||(28036387-28036452)
chr3 (21-98)||(28479860-28479937)
chr3 (21-98)||(28509043-28509120)
chr3 (98-163)||(28056547-28056612)
chr3 (98-163)||(28066972-28067037)
chr3 (296-368)||(26236438-26236510)
chr3 (233-284)||(28054960-28055011)
chr3 (233-284)||(28065385-28065436)
chr3 (233-285)||(8539704-8539756)
chr3 (233-281)||(28149203-28149251)
chr3 (199-227)||(28161470-28161498)
[»] scaffold0257 (2 HSPs)
scaffold0257 (24-164)||(19079-19219)
scaffold0257 (233-279)||(18626-18672)
[»] scaffold0922 (1 HSPs)
scaffold0922 (21-87)||(1819-1885)
[»] chr4 (3 HSPs)
chr4 (405-435)||(18010742-18010772)
chr4 (199-227)||(9328792-9328820)
chr4 (199-227)||(9382569-9382597)


Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 10 - 435
Target Start/End: Complemental strand, 8020988 - 8020563
Alignment:
Q  10 agaagaaggttaacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactag 109  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020988 agaagaaggttaacttcaaaatgaaaagggcgatgagataacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactag 8020889  T
Q  110 tttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctattgctctttggttgtcaccttcttcaac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8020888 tttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctatagctctttggttgtcaccttcttcaac 8020789  T
Q  210 acttatttcgctaacctgtcaatattgtggtataattcaattccggtattgacaaagtgtaaaaaagaatacaagaaatatgtatatatttggagaggaa 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020788 acttatttcgctaacctgtcaatattgtggtataattcaattccggtactgacaaagtgtaaaaaagaatacaagaaatatgtatatatttggagaggaa 8020689  T
Q  310 tatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaacaatttcaacaaa 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020688 tatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaacaatttcaacaaa 8020589  T
Q  410 ttcatgctctgtctctagtgtttgtt 435  Q
    ||||||||||||||||||||||||||    
T  8020588 ttcatgctctgtctctagtgtttgtt 8020563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 286 - 363
Target Start/End: Complemental strand, 22965088 - 22965011
Alignment:
Q  286 aatatgtatatatttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaata 363  Q
    |||| ||||||||||||||||||||||| |||||| ||| ||| |||||||| ||||||| |||||||||||||||||    
T  22965088 aataagtatatatttggagaggaatatcgaagtgaatttgacacggccttcatattacttctgaatttgttggtaata 22965011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 286 - 363
Target Start/End: Complemental strand, 22399588 - 22399511
Alignment:
Q  286 aatatgtatatatttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaata 363  Q
    |||| ||||||||||||||||||||||  |||||| ||| ||| |||||||| ||||||| |||||||||||||||||    
T  22399588 aataagtatatatttggagaggaatatagaagtgaatttgacacggccttcatattacttctgaatttgttggtaata 22399511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 9e-77; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 28151795 - 28151610
Alignment:
Q  21 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 120  Q
    ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  28151795 aacttcaaaataaaaagggcgatgaggtaacttaagaaaataaaagcgatccaaagattcttcaccttgatcatcattagtgttactagtttcctgccag 28151696  T
Q  121 atttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctattgctctttggttgtcaccttcttc 206  Q
    |||||||||||||||||||||||||||| ||||||||||||| | |||| |||| |||||||||||||||||||||||||||||||    
T  28151695 atttcaacatcaacatcttgagtggttacaggctttgttatgtcaattggagtataagctattgctctttggttgtcaccttcttc 28151610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 286 - 435
Target Start/End: Complemental strand, 28151026 - 28150880
Alignment:
Q  286 aatatgtatatatttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgttgctactgatggcatctc 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||||||||||    
T  28151026 aatatgtatatatttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttgg---tattattgctactgatggcatctc 28150930  T
Q  386 ttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttgtt 435  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  28150929 ttgttgaggaacattttcaacaaattcatgctttgtctctagtgtttgtt 28150880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 291 - 435
Target Start/End: Complemental strand, 28003270 - 28003129
Alignment:
Q  291 gtatatatttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgtt 390  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   | || |||||||||||||||||||||| |    
T  28003270 gtatatattgggagaggattatccaagtgattttcacatggccttcaaattacttttgaatttgttgg---ttttattgctactgatggcatctcttgat 28003174  T
Q  391 gaggaacaatttcaacaaattcatgctctgtctctagtgtttgtt 435  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||    
T  28003173 gagggacattttcaacaaattcatgctctgtctctagtgtttgtt 28003129  T

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Target: chr3; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 27979538 - 27979439
Alignment:
Q  336 caaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttgtt 435  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27979538 caaattactttcgaatttgttggtaatattgttgctactgatggcatgtcttgttgaggaacattttcaacaaattcatgctctgtctctagtgtttgtt 27979439  T

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Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 17744491 - 17744615
Alignment:
Q  21 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 120  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| || |||| | || |||||||| || |||||||||||||||    
T  17744491 aacttcaaaatgaaaagagcgatgaggtaacttaagaaaataaaatcgatccaaagattttttaccttggtcatcattagtctttctagtttcctgccag 17744590  T
Q  121 atttcaacatcaacatcttgagtgg 145  Q
    |||||||||||||||||||||||||    
T  17744591 atttcaacatcaacatcttgagtgg 17744615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 19045811 - 19045935
Alignment:
Q  21 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 120  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| || |||| | || |||||||| || |||||||||||||||    
T  19045811 aacttcaaaatgaaaagagcgatgaggtaacttaagaaaataaaatcgatccaaagattttttaccttggtcatcattagtctttctagtttcctgccag 19045910  T
Q  121 atttcaacatcaacatcttgagtgg 145  Q
    |||||||||||||||||||||||||    
T  19045911 atttcaacatcaacatcttgagtgg 19045935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 192
Target Start/End: Complemental strand, 28037584 - 28037413
Alignment:
Q  21 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 120  Q
    ||||||||||||||||||| ||||||||||||| |||||| || || |||||||||| |||| |||| || | ||||||||||||||||||||  |||||    
T  28037584 aacttcaaaatgaaaagggtgatgaggtaactttagaaaataacactgatccaaagagtctttaccttgaccatcattagtgttactagtttcgcgccag 28037485  T
Q  121 atttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctattgctctttgg 192  Q
     |||  | ||||||||||| |||||| | ||||||||||||||  ||||||| ||||||||| |||||||||    
T  28037484 tttttgagatcaacatcttcagtggtaacaggctttgttatggtaattgaaggagaagctatggctctttgg 28037413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 11421133 - 11420963
Alignment:
Q  21 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 120  Q
    |||||| |||||||||||| ||||  |||||||||||||| ||||| |||||||||| || |||||| |||| |||||||  |||||||||||||| |||    
T  11421133 aacttctaaatgaaaagggtgatgtcgtaacttaagaaaataaaactgatccaaagagtcatcaccttgatcatcattagccttactagtttcctgacag 11421034  T
Q  121 atttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctattgctctttg 191  Q
    |||| |||||||||||||||| ||||   ||||||||||||||| |||  || ||||||||| ||| ||||    
T  11421033 attttaacatcaacatcttgaatggtagcaggctttgttatggcaatttgaggagaagctatggctatttg 11420963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 28150112 - 28149970
Alignment:
Q  21 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 120  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||  ||||| |||| ||||||||| |||| |||||||||||||||||||||||| ||    
T  28150112 aacttcaaaatgaaaagggtgatgagataacttaagaaaataaaattgatcctaagactcttcaccttgatcatcattagtgttactagtttcctgcaag 28150013  T
Q  121 atttcaacatcaacatcttgagtggttagaggctttgttatgg 163  Q
     | | ||||| ||| ||||||||||| |||||| |||||||||    
T  28150012 ttattaacatgaacttcttgagtggtaagaggccttgttatgg 28149970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 337 - 435
Target Start/End: Complemental strand, 27919414 - 27919319
Alignment:
Q  337 aaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttgtt 435  Q
    ||||||||| |||||||||||||| |||||   ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27919414 aaattacttctgaatttgttggtattattg---ctactgatggcatcttttgttgaggaacattttcaacaaattcatgctctgtctctagtgtttgtt 27919319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 28151364 - 28151276
Alignment:
Q  199 ccttcttcaacacttatttcgctaacctgtcaatattgtggtataattcaattccggtattgacaaagtgtaaaaaagaatacaagaaa 287  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||| |||||||||||||||||    
T  28151364 ccttcttcaacacttatttcgctaacctgtcaatattgtagtataattcaatttctgtactgacaaagtgtgaaaaagaatacaagaaa 28151276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 27954471 - 27954347
Alignment:
Q  21 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 120  Q
    ||||||||||||||||||  |||||||||||||| ||||| || ||  ||||||||| | ||||||| |||| |||||||||||||||||||||||||||    
T  27954471 aacttcaaaatgaaaaggt-gatgaggtaacttatgaaaacaacactaatccaaagagttttcaccttgatcatcattagtgttactagtttcctgccag 27954373  T
Q  121 atttcaacatcaacatcttgagtggt 146  Q
    |||| | ||||||||| |||||||||    
T  27954372 attttatcatcaacatattgagtggt 27954347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 68 - 164
Target Start/End: Original strand, 27458885 - 27458981
Alignment:
Q  68 gatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatggc 164  Q
    |||||||||| ||||||||| |||| || ||||| || ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  27458885 gatccaaagagtcttcaccttgatcatccttagtcttgctagtttcctgccagattttaacatcaacatcttgagtggtaagaggctttgttatggc 27458981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 28162021 - 28161925
Alignment:
Q  21 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgc 117  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||  |||||||||| ||||||||| |||| ||||||||||||||||||||||||    
T  28162021 aacttcaaaatgaaaagggtgatgagataacttaagaaaataaaattgatccaaagagtcttcaccttgatcatcattagtgttactagtttcctgc 28161925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 27 - 146
Target Start/End: Original strand, 8539262 - 8539381
Alignment:
Q  27 aaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttca 126  Q
    ||||||||||||| ||  |||||||||||||||| ||||| ||||||| |||||||||||| |||    |||||||||||||||||||||||| | || |    
T  8539262 aaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagttta 8539361  T
Q  127 acatcaacatcttgagtggt 146  Q
    ||||||||||||||||||||    
T  8539362 acatcaacatcttgagtggt 8539381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 28186064 - 28185968
Alignment:
Q  21 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgc 117  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||  |||||||||| ||||||||| |||| |||| |||||||||||||||||||    
T  28186064 aacttcaaaatgaaaagggtgatgagataacttaagaaaataaaattgatccaaagagtcttcaccttgatcatcatcagtgttactagtttcctgc 28185968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 294 - 435
Target Start/End: Original strand, 27459906 - 27460044
Alignment:
Q  294 tatatttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgag 393  Q
    |||||||||||| |||||| |||| || ||  ||||||||| || ||||||| ||| | ||||||||   |||||||||||||||||||||| | |||||    
T  27459906 tatatttggagatgaatatgcaagggacttcgacatggcctgcacattacttctgagtctgttggta---ttgttgctactgatggcatctccttttgag 27460002  T
Q  394 gaacaatttcaacaaattcatgctctgtctctagtgtttgtt 435  Q
    ||||| ||||| ||||||||||| ||||||| |||| |||||    
T  27460003 gaacattttcatcaaattcatgccctgtctcaagtggttgtt 27460044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 27920389 - 27920262
Alignment:
Q  21 aacttcaaaatgaaaagggcgatgaggtaa---cttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgc 117  Q
    ||||||||||||||||||  ||||||||||   |||| ||||| || ||  ||||||||| | ||||||| |||| ||||||||||||||||||||||||    
T  27920389 aacttcaaaatgaaaaggt-gatgaggtaattgcttatgaaaacaacactaatccaaagagttttcaccttgatcatcattagtgttactagtttcctgc 27920291  T
Q  118 cagatttcaacatcaacatcttgagtggt 146  Q
    ||||||| | ||||||||| |||||||||    
T  27920290 cagattttatcatcaacatattgagtggt 27920262  T

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Target: chr3; HSP #19
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 54 - 163
Target Start/End: Complemental strand, 27776634 - 27776525
Alignment:
Q  54 aagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggc 153  Q
    ||||||| ||||  |||||||||| | ||||||| |||  |||||||| ||||||||||||||| || |||||||||||||||||||||| ||  |||||    
T  27776634 aagaaaataaaattgatccaaagagttttcaccttgatgatcattagtcttactagtttcctgcaagttttcaacatcaacatcttgagtagtaggaggc 27776535  T
Q  154 tttgttatgg 163  Q
    ||||||||||    
T  27776534 tttgttatgg 27776525  T

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Target: chr3; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 305 - 434
Target Start/End: Complemental strand, 11420075 - 11419949
Alignment:
Q  305 aggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaacaatttca 404  Q
    |||||||| |||| |||||| || |||| |  ||||||||| |||||||||||||| |||||   ||| |||||| ||||| ||  |||||||| |||||    
T  11420075 aggaatatgcaagagattttgacgtggcttgaaaattacttctgaatttgttggtattattg---ctattgatggaatctcatgacgaggaacattttca 11419979  T
Q  405 acaaattcatgctctgtctctagtgtttgt 434  Q
    |||||| ||||||||||| |||||||||||    
T  11419978 acaaatccatgctctgtcactagtgtttgt 11419949  T

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Target: chr3; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 368 - 435
Target Start/End: Original strand, 17745559 - 17745626
Alignment:
Q  368 tgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttgtt 435  Q
    ||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| ||||||||    
T  17745559 tgctactgatggcatttctcgtcgaggaacattttcaacaaattcatgctctgtctctattgtttgtt 17745626  T

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Target: chr3; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 368 - 435
Target Start/End: Original strand, 19046879 - 19046946
Alignment:
Q  368 tgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttgtt 435  Q
    ||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| ||||||||    
T  19046879 tgctactgatggcatttctcgtcgaggaacattttcaacaaattcatgctctgtctctattgtttgtt 19046946  T

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Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 367 - 432
Target Start/End: Complemental strand, 28036452 - 28036387
Alignment:
Q  367 ttgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgttt 432  Q
    |||||||||||||||||||||   |||| | | |||||||||||||||||||||||||||||||||    
T  28036452 ttgctactgatggcatctcttcacgagggaaattttcaacaaattcatgctctgtctctagtgttt 28036387  T

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Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 28479860 - 28479937
Alignment:
Q  21 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcatt 98  Q
    |||||||||||| |||||| |||||||||| ||||||||| ||||  |||||||||| ||||||||| |||| |||||    
T  28479860 aacttcaaaatgcaaagggtgatgaggtaaattaagaaaataaaattgatccaaagagtcttcaccttgatcatcatt 28479937  T

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Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 28509043 - 28509120
Alignment:
Q  21 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcatt 98  Q
    |||||||||||| |||||| |||||||||| ||||||||| ||||  |||||||||| ||||||||| |||| |||||    
T  28509043 aacttcaaaatgcaaagggtgatgaggtaaattaagaaaataaaattgatccaaagagtcttcaccttgatcatcatt 28509120  T

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Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 28056612 - 28056547
Alignment:
Q  98 tagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatgg 163  Q
    |||||||||||||||||||| || | | ||||| ||| ||||||||||| |||||| |||||||||    
T  28056612 tagtgttactagtttcctgcaagttattaacatgaacttcttgagtggtaagaggccttgttatgg 28056547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 28067037 - 28066972
Alignment:
Q  98 tagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatgg 163  Q
    |||||||||||||||||||| || | | ||||| ||| ||||||||||| |||||| |||||||||    
T  28067037 tagtgttactagtttcctgcaagttattaacatgaacttcttgagtggtaagaggccttgttatgg 28066972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 368
Target Start/End: Original strand, 26236438 - 26236510
Alignment:
Q  296 tatttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgtt 368  Q
    ||||||||||||||| |||| | || ||| |||||| || |||||||||| | ||||||||||||||| ||||    
T  26236438 tatttggagaggaatttccatgggaattttacatggtctacaaattacttcttaatttgttggtaataatgtt 26236510  T

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Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 28055011 - 28054960
Alignment:
Q  233 attgtggtataattcaattccggtattgacaaagtgtaaaaaagaatacaag 284  Q
    ||||| ||||||||||||||| | ||||||||||||| ||||| ||||||||    
T  28055011 attgtagtataattcaattcctgcattgacaaagtgttaaaaaaaatacaag 28054960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 28065436 - 28065385
Alignment:
Q  233 attgtggtataattcaattccggtattgacaaagtgtaaaaaagaatacaag 284  Q
    ||||| ||||||||||||||| | ||||||||||||| ||||| ||||||||    
T  28065436 attgtagtataattcaattcctgcattgacaaagtgttaaaaaaaatacaag 28065385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 8539704 - 8539756
Alignment:
Q  233 attgtggtataattcaattccggtattgacaaagtgtaaaaaagaatacaaga 285  Q
    ||||| ||||||||||||||| | ||||  ||||||| |||||||||||||||    
T  8539704 attgtagtataattcaattcctgcattggaaaagtgttaaaaagaatacaaga 8539756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 28149251 - 28149203
Alignment:
Q  233 attgtggtataattcaattccggtattgacaaagtgtaaaaaagaatac 281  Q
    ||||| ||||||||||||||| | |||||||||||||  ||||||||||    
T  28149251 attgtagtataattcaattcctgcattgacaaagtgttcaaaagaatac 28149203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 28161498 - 28161470
Alignment:
Q  199 ccttcttcaacacttatttcgctaacctg 227  Q
    |||||||||||||||||||||||||||||    
T  28161498 ccttcttcaacacttatttcgctaacctg 28161470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 19219 - 19079
Alignment:
Q  24 ttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatt 123  Q
    |||||||||||||||| |||||||||||||||||||| || |  |||||||||| ||||||||| |||| ||| || ||||||||||||||||| || |     
T  19219 ttcaaaatgaaaagggtgatgaggtaacttaagaaaataatattgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagtta 19120  T
Q  124 tcaacatcaacatcttgagtggttagaggctttgttatggc 164  Q
    | ||||||||||||||||||||| |||||||||||||||||    
T  19119 ttaacatcaacatcttgagtggtaagaggctttgttatggc 19079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 18672 - 18626
Alignment:
Q  233 attgtggtataattcaattccggtattgacaaagtgtaaaaaagaat 279  Q
    ||||| ||||||||||||||| | ||||||||||||| |||||||||    
T  18672 attgtagtataattcaattcctgcattgacaaagtgtcaaaaagaat 18626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 1885 - 1819
Alignment:
Q  21 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacct 87  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||||||  ||| | |||||||||    
T  1885 aacttcaaaatgaaaagggtgatgtggtaacttaagaaaataaaaccgattgaaatactcttcacct 1819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 435
Target Start/End: Complemental strand, 18010772 - 18010742
Alignment:
Q  405 acaaattcatgctctgtctctagtgtttgtt 435  Q
    |||||||||||||||||||||||||||||||    
T  18010772 acaaattcatgctctgtctctagtgtttgtt 18010742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 9328792 - 9328820
Alignment:
Q  199 ccttcttcaacacttatttcgctaacctg 227  Q
    |||||||||||||||||||||||||||||    
T  9328792 ccttcttcaacacttatttcgctaacctg 9328820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 9382569 - 9382597
Alignment:
Q  199 ccttcttcaacacttatttcgctaacctg 227  Q
    |||||||||||||||||||||||||||||    
T  9382569 ccttcttcaacacttatttcgctaacctg 9382597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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