View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_40 (Length: 450)
Name: NF15941_low_40
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 43 - 435
Target Start/End: Complemental strand, 38981201 - 38980813
Alignment:
| Q |
43 |
gccaagtattcataatattaaaatacaaagctagaaggctaaattggcgtcgaggtaaaatgttgtggcgaaaaaggcaaagcaatgacatatatcaaaa |
142 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
38981201 |
gccaagtattcataatattaaaattgaaagctagaaggctaaattggcgtcgaagtaaaatgttgtggcgaaaaaggcaaagcaat-------atcaaaa |
38981109 |
T |
|
| Q |
143 |
tggaggaactgcctggaagattcgatagagcttcatatgagtttccaattcaattagaacttcccgaaattgatcttcaacacttttaaatttgatttga |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
38981108 |
tggaggaactgcctggaagattcgatagagcttcatatgaccttccaattcaattacaacttcccgaagttgatcttcaacacttttcaatttgatttga |
38981009 |
T |
|
| Q |
243 |
tcatcagcaaggcgatggaaaattgatttaacttctttgttcaaagatgcgatcttatctttctcttgatcttgaccctcagtaactttggccctctcaa |
342 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38981008 |
tcatcagcgaggcgatggaaaattgatttaacttctttgtttaaagatgcgatcttatctttctctttatcttgaccctcagtaactttggccctctcaa |
38980909 |
T |
|
| Q |
343 |
cttgtagtttttcaagcttggc---attaagatcagcaatctgagcatcaagagagttgagttggttttgatggtttgcgaagaaagtccttgaga |
435 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38980908 |
cttgtagtttttcaagcttggcattattaagatcagcaatctgagcatcaagaaagttgagttggttttgatggtttgtgaagaaagtccttgaga |
38980813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 136 - 417
Target Start/End: Original strand, 39863029 - 39863310
Alignment:
| Q |
136 |
atcaaaatggaggaactgcctggaagattcgatagagcttcatatgagtttccaattcaattagaacttcccgaaattgatcttcaacacttttaaattt |
235 |
Q |
| |
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||||||||||||| | |||| |||||||| |||| |||| |||| ||||||||||| || | | ||| | | || ||||||||||||||| ||||| |
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| T |
39863029 |
atcaaaatggagggattgccctgaagattctgtagaccttctcatgactttccaattcagtttgcgcctccgggattttatcttcaacacttttcaattt |
39863128 |
T |
|
| Q |
236 |
gatttgatcatcagcaaggcgatggaaaattgatttaacttctttgttcaaagatgcgatcttatctttctcttgatcttgaccctcagtaactttggcc |
335 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | |||| || |||||| |
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| T |
39863129 |
gatttgatcattagcaaggcgatggaaaattgatttaacttctttgttaaaagatgtgatcttatctttctcttgatcttcaatctcatcaattttggct |
39863228 |
T |
|
| Q |
336 |
ctctcaacttgtagtttttcaagcttggcattaagatcagcaatctgagcatcaagagagttgagttggttttgatggtttg |
417 |
Q |
| |
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|| ||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| |||||||||||| |
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| T |
39863229 |
ctgtcaccttgtagtttttcaagcttggctttaagatcagcaatttgagcatcaagagagttgcgttgtgtttgatggtttg |
39863310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 212 - 410
Target Start/End: Original strand, 39909926 - 39910119
Alignment:
| Q |
212 |
ttgatcttcaacacttttaaatttgatttgatcatcagcaaggcgatggaaaattgatttaacttctttgttcaaagatgcgatcttatctttctcttga |
311 |
Q |
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|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39909926 |
ttgatcttcaacactttccaatttgatttgatcatcagagaggcgatggaaaattgatttaacttctttgttcaaagatgcgatcctatctttctcttga |
39910025 |
T |
|
| Q |
312 |
tcttgaccctcagtaactttggccctctcaacttgtagtttttcaagcttggcattaagatcagcaatctgagcatcaagagagttgagttggttttga |
410 |
Q |
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|||||| || |||| || | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
39910026 |
tcttgaatct---taacgatg--attgtcaccttgtagtttttcaagcttggcattaagatcagcaatctgagcatcaagaaagtttagttggttttga |
39910119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 215 - 403
Target Start/End: Original strand, 39855909 - 39856097
Alignment:
| Q |
215 |
atcttcaacacttttaaatttgatttgatcatcagcaaggcgatggaaaattgatttaacttctttgttcaaagatgcgatcttatctttctcttgatct |
314 |
Q |
| |
|
||||||||| || || || ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| |
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|
| T |
39855909 |
atcttcaacgctcttcaacttgatttgatcatcagcgaggcgatggaaaattgatttaacttcattgttaaaagatgtgatcttatctttctcttgatct |
39856008 |
T |
|
| Q |
315 |
tgaccctcagtaactttggccctctcaacttgtagtttttcaagcttggcattaagatcagcaatctgagcatcaagagagttgagttg |
403 |
Q |
| |
|
||| ||||| | ||| |||| || |||||||||||||||||||||| || | |||||||||| || |||||||| |||||||| |
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| T |
39856009 |
tgaatctcagccattttagcccggtcgccttgtagtttttcaagcttggctttgatatcagcaatccgaatgtcaagagacttgagttg |
39856097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 234 - 402
Target Start/End: Original strand, 39846210 - 39846378
Alignment:
| Q |
234 |
ttgatttgatcatcagcaaggcgatggaaaattgatttaacttctttgttcaaagatgcgatcttatctttctcttgatcttgaccctcagtaactttgg |
333 |
Q |
| |
|
|||| ||||||| ||| |||||||||||||||||||||||||||||||| | ||| | ||||||| ||||||||||| ||| | |||| || ||||| |
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|
| T |
39846210 |
ttgacttgatcaatagcgaggcgatggaaaattgatttaacttctttgttaagagacgtgatcttagctttctcttgagcttcaatctcaacaattttgg |
39846309 |
T |
|
| Q |
334 |
ccctctcaacttgtagtttttcaagcttggcattaagatcagcaatctgagcatcaagagagttgagtt |
402 |
Q |
| |
|
| || || ||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
39846310 |
ctctttccccttgtagtttttcaagcatggctttaagatcagcaatctgagtatcaagagagttgagtt |
39846378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 99 - 353
Target Start/End: Complemental strand, 39738283 - 39738028
Alignment:
| Q |
99 |
aaaatgttgtggcgaaaaaggcaaagcaatgacatatatcaaaatggaggaactgcctggaagattcgatagagcttcatatgagtttccaattcaatta |
198 |
Q |
| |
|
|||||||||||| |||||||| || ||| ||||| ||||||||||||| | | || ||||||| || |||||||| || | |||||||||| | |
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| T |
39738283 |
aaaatgttgtggtaaaaaaggctaaccaaatacataaatcaaaatggagggattttcttgaagatttgaaagagcttctcataaccttccaattcagatt |
39738184 |
T |
|
| Q |
199 |
gaacttcccgaaattgatcttc-aacacttttaaatttgatttgatcatcagcaaggcgatggaaaattgatttaacttctttgttcaaagatgcgatct |
297 |
Q |
| |
|
|| |||| ||| ||||||||| ||||||||| || ||||||||||||||| | ||| | ||||||||||| ||||| ||||| |||||||||| |||| |
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|
| T |
39738183 |
gagtttccggaatttgatcttccaacacttttcaacttgatttgatcatcaacgaggtgctggaaaattgacttaacatctttattcaaagatgtaatct |
39738084 |
T |
|
| Q |
298 |
tatctttctcttgatcttgaccctcagtaactttggccctctcaacttgtagtttt |
353 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||||| || ||||||||||| |
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|
| T |
39738083 |
tatctttctcttgatcttgaatctcagcaattttggccctgtcttcttgtagtttt |
39738028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 39909802 - 39909903
Alignment:
| Q |
43 |
gccaagtattcataatattaaaatacaaagctagaaggctaaattggcgtcgaggtaaaatgttgtggcgaaaaaggcaaagcaatgacatatatcaaaa |
142 |
Q |
| |
|
||||||| |||||||||||||| || ||||||| ||||||||||||||||||| |||||||||| |||| ||||||||||||||| ||||| ||||||| |
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|
| T |
39909802 |
gccaagtgttcataatattaaagtagaaagctataaggctaaattggcgtcgaagtaaaatgttatggccaaaaaggcaaagcaacaacataaatcaaaa |
39909901 |
T |
|
| Q |
143 |
tg |
144 |
Q |
| |
|
|| |
|
|
| T |
39909902 |
tg |
39909903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 272 - 360
Target Start/End: Complemental strand, 53495721 - 53495633
Alignment:
| Q |
272 |
aacttctttgttcaaagatgcgatcttatctttctcttgatcttgaccctcagtaactttggccctctcaacttgtagtttttcaagct |
360 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||| | ||| | ||||||||| ||| |||||||||||||||||| |
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|
| T |
53495721 |
aacttctttgttcaaagatgtgatcttatctttttcttgatcttgaatcacagccagtttggccctttcaccttgtagtttttcaagct |
53495633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 29451986 - 29452060
Alignment:
| Q |
44 |
ccaagtattcataatat-taaaatacaaagctagaaggctaaattggcgtcgaggtaaaatgttgtggcgaaaaa |
117 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| || |||||||||| | || ||||||||||||||| ||||| |
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|
| T |
29451986 |
ccaagtattcataatatataaaatagaaagctagcagtctaaattggcattgaagtaaaatgttgtggccaaaaa |
29452060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 14329318 - 14329415
Alignment:
| Q |
221 |
aacacttttaaatttgatttgatcatcagcaaggcgatggaaaattgatttaacttctttgttcaaagatgcgatcttatctt-tctcttgatcttga |
317 |
Q |
| |
|
||||||||| || || |||||||||||| | ||| |||| | ||||||||||||| | |||| ||||||| ||||||||||| |||||||||||||| |
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|
| T |
14329318 |
aacactttttaactttatttgatcatcaacgaggtgatgatatattgatttaacttttatgttgaaagatgtgatcttatcttgtctcttgatcttga |
14329415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 14422328 - 14422425
Alignment:
| Q |
221 |
aacacttttaaatttgatttgatcatcagcaaggcgatggaaaattgatttaacttctttgttcaaagatgcgatcttatctt-tctcttgatcttga |
317 |
Q |
| |
|
||||||||| || || |||||||||||| | ||| |||| | ||||||||||||| | |||| ||||||| ||||||||||| |||||||||||||| |
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|
| T |
14422328 |
aacactttttaactttatttgatcatcaacgaggtgatgatatattgatttaacttttatgttgaaagatgtgatcttatcttgtctcttgatcttga |
14422425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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