View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_41 (Length: 449)

Name: NF15941_low_41
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_41
NF15941_low_41
[»] chr8 (4 HSPs)
chr8 (184-444)||(22687642-22687921)
chr8 (335-398)||(11550278-11550340)
chr8 (335-398)||(11545590-11545653)
chr8 (354-415)||(11562916-11562980)
[»] chr5 (4 HSPs)
chr5 (182-327)||(27472180-27472325)
chr5 (18-158)||(33079013-33079154)
chr5 (375-444)||(27472321-27472390)
chr5 (21-60)||(41518755-41518794)
[»] chr3 (3 HSPs)
chr3 (182-275)||(24263481-24263574)
chr3 (288-419)||(19859586-19859716)
chr3 (184-237)||(19859478-19859531)
[»] chr6 (1 HSPs)
chr6 (354-390)||(34407717-34407753)


Alignment Details
Target: chr8 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 184 - 444
Target Start/End: Complemental strand, 22687921 - 22687642
Alignment:
Q  184 cttttacttgattattacatagaaacatagttatcaattggtactttcttgtaggaatgtagtcagctatttagaacagtggatctttccttcatatcaa 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22687921 cttttacttgattattacatagaaacatagttatcaattggtactttcttgtaggaatgtagtcagctatttagaacagtggatctttccttcatatcaa 22687822  T
Q  284 att------------------gatatctgaatttttatcaatgaaattctaatc-aagtgctaaattattttgttccagttaggtaagttaaaacattac 364  Q
     ||                  ||||||||||||||| ||||||||| ||||||| |||||| ||||||| |||||| |||| ||||||| ||||||| |     
T  22687821 ttttattttacatgaaagtgtgatatctgaatttttttcaatgaaaatctaatccaagtgcaaaattatattgttctagttgggtaagtcaaaacatcat 22687722  T
Q  365 caatttcatttgctatagtaaactctattaatggcattgaaagtaattttaaattgacattacacactgttaaacctatg 444  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22687721 taatttcatttgctatagtaaactctattaatggcattgaaagtaattttaaattgacattacacactgttaaacctatg 22687642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 11550278 - 11550340
Alignment:
Q  335 ttgttccagttaggtaagttaaaacattaccaatttcatttgctatagtaaactctattaatgg 398  Q
    |||||||||||||| || | |||||||||||| ||||||||| |||||||||||||||||||||    
T  11550278 ttgttccagttagggaact-aaaacattaccactttcatttgttatagtaaactctattaatgg 11550340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 11545590 - 11545653
Alignment:
Q  335 ttgttccagttaggtaagttaaaacattaccaatttcatttgctatagtaaactctattaatgg 398  Q
    ||||||||||| || ||  |||||||| |||| ||||||||| ||||||||| |||||||||||    
T  11545590 ttgttccagttgggaaatctaaaacatcaccactttcatttgttatagtaaaatctattaatgg 11545653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 415
Target Start/End: Complemental strand, 11562980 - 11562916
Alignment:
Q  354 taaaacattaccaatttcatttgctatagtaaactctattaa---tggcattgaaagtaatttta 415  Q
    |||||||| |||| ||||||||| ||||||||| ||||||||   ||||||||||||| ||||||    
T  11562980 taaaacatcaccactttcatttgttatagtaaaatctattaatggtggcattgaaagttatttta 11562916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 8e-65; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 182 - 327
Target Start/End: Original strand, 27472180 - 27472325
Alignment:
Q  182 tgcttttacttgattattacatagaaacatagttatcaattggtactttcttgtaggaatgtagtcagctatttagaacagtggatctttccttcatatc 281  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27472180 tgcttttacttgattattacataggaacatagttatcaattggtaccttcttataggaatgtagtcagctatttagaacagtggatctttccttcatatc 27472279  T
Q  282 aaattgatatctgaatttttatcaatgaaattctaatcaagtgcta 327  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||    
T  27472280 aaatcgatatctgaatttttatcaatgaaattttaatcaagtgcta 27472325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 33079154 - 33079013
Alignment:
Q  18 cacagtagaattagcatagttatttaggggaggttagtcagagaagagagggcgtggtgtgaacgattattctc-nnnnnnnagcaatgaatgattattc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        | ||||||||||||||||    
T  33079154 cacagtagaattagcatagttatttaggggaggttagtcagagaagagagggcgtggtgtgaacgattattctcttttttttaccaatgaatgattattc 33079055  T
Q  117 tcttgttcagcagttatttatggagcttttatattcatgttc 158  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33079054 tcttgttcagcagttatttatggagcttttatattcatgttc 33079013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 375 - 444
Target Start/End: Original strand, 27472321 - 27472390
Alignment:
Q  375 tgctatagtaaactctattaatggcattgaaagtaattttaaattgacattacacactgttaaacctatg 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27472321 tgctatagtaaactctattaatggcattgaaagtaattttaaattgacattacacactgttaaacttatg 27472390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 41518794 - 41518755
Alignment:
Q  21 agtagaattagcatagttatttaggggaggttagtcagag 60  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41518794 agtagaattagcatagttatttaggggaggttagtcagag 41518755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 275
Target Start/End: Original strand, 24263481 - 24263574
Alignment:
Q  182 tgcttttacttgattattacatagaaacatagttatcaattggtactttcttgtaggaatgtagtcagctatttagaacagtggatctttcctt 275  Q
    ||||||||||| |||| ||  |||||||| ||||||||||||||||   |||| || |||||||  | |||||||||||| |||||||||||||    
T  24263481 tgcttttactttattactatgtagaaacacagttatcaattggtaccaacttgaagaaatgtagctaactatttagaacactggatctttcctt 24263574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 419
Target Start/End: Original strand, 19859586 - 19859716
Alignment:
Q  288 atatctgaatttttatcaatgaaattctaatcaagtgctaaattattttgttccagttaggtaagttaaaacattaccaatttcatttgctatagtaaac 387  Q
    |||||||||||| ||||||| |||||   |||| ||||| | |||  |||||||| || || ||| || ||||| |||| |||||||| |||| ||||||    
T  19859586 atatctgaatttatatcaattaaattgatatcatgtgctgacttacattgttccatttgggaaagctagaacataaccattttcattttctat-gtaaac 19859684  T
Q  388 tctattaatggcattgaaagtaattttaaatt 419  Q
    || |||| ||||||||||||| |||| |||||    
T  19859685 tccattagtggcattgaaagtgatttaaaatt 19859716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 19859478 - 19859531
Alignment:
Q  184 cttttacttgattattacatagaaacatagttatcaattggtactttcttgtag 237  Q
    |||||||||||||||| |||||||| |||||||||| ||||||| | |||||||    
T  19859478 cttttacttgattattgcatagaaatatagttatcagttggtacctgcttgtag 19859531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 34407753 - 34407717
Alignment:
Q  354 taaaacattaccaatttcatttgctatagtaaactct 390  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  34407753 taaaacattaccaatttcatttgccatagtgaactct 34407717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University